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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_10585 and AO356_10590 are separated by 202 nucleotides
AO356_10590 and AO356_10595 are separated by 684 nucleotides
AO356_10595 and AO356_10600 overlap by 4 nucleotides
AO356_10600 and AO356_10605 are separated by 10 nucleotides
AO356_10585: AO356_10585 - hypothetical protein, at 2,408,532 to 2,409,224
_10585
AO356_10590: AO356_10590 - GntR family transcriptional regulator, at 2,409,427 to 2,410,119
_10590
AO356_10595: AO356_10595 - mangotoxin biosynthesis-involved protein MgoB, at 2,410,804 to 2,411,580
_10595
AO356_10600: AO356_10600 - aminobenzoate oxygenase, at 2,411,577 to 2,412,509
_10600
AO356_10605: AO356_10605 - peptide transporter, at 2,412,520 to 2,416,086
_10605
Group
Condition
AO356
_10585
AO356
_10590
AO356
_10595
AO356
_10600
AO356
_10605
carbon source
D-Lactate (C)
-2.9
-0.2
+0.1
-0.1
-0.0
carbon source
L-Arabinose (C)
-2.5
-0.5
-0.0
-0.1
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-3.1
-0.2
+0.1
+0.2
+0.0
carbon source
acetate (C)
-2.7
-0.1
+0.1
-0.1
-0.1
carbon source
D-Ribose (C)
-2.3
-0.4
-0.1
+0.1
-0.2
nitrogen source
Inosine (N)
-2.7
-0.1
+0.1
-0.0
+0.1
carbon source
Carbon source Sucrose 10 mM
-2.0
-0.3
-0.2
-0.1
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
-1.8
-0.2
-0.3
-0.1
-0.1
nitrogen source
nitrite (N)
-1.9
-0.5
-0.1
-0.0
+0.0
carbon source
pyruvate (C)
-2.2
+0.1
-0.1
-0.2
-0.1
carbon source
Carbon source Sucrose 5 mM
-2.0
-0.2
-0.0
-0.1
-0.1
carbon source
Carbon source D-Mannitol 2.5 mM
-1.8
-0.2
-0.2
-0.1
-0.1
carbon source
D-Xylose (C)
-2.3
-0.3
-0.0
+0.3
-0.1
carbon source
Carbon source D-Glucose 10 mM
-2.0
-0.3
-0.0
+0.0
-0.0
nitrogen source
D-Serine (N)
-2.3
+0.1
+0.1
-0.1
-0.1
nitrogen source
Ammonium chloride (N)
-2.0
-0.2
-0.2
+0.1
+0.1
carbon source
Carbon source Sucrose 2.5 mM
-2.2
+0.1
+0.1
-0.0
-0.0
carbon source
Carbon source D-Mannitol 5 mM
-1.9
-0.4
+0.1
+0.2
-0.0
nitrogen source
Urea (N)
-2.0
-0.8
+0.3
+0.4
+0.1
carbon source
Carbon source Sucrose 10 mM
-2.4
+0.2
-0.0
+0.3
-0.1
nitrogen source
Gly-Glu (N)
-2.0
-0.2
+0.2
+0.1
-0.1
nitrogen source
Adenosine (N)
-1.8
-0.5
-0.0
+0.3
+0.1
carbon source
D-Fructose (C)
-2.2
-0.1
+0.3
+0.1
-0.0
carbon source
Carbon source Sucrose 2.5 mM
-2.1
+0.1
+0.0
+0.3
-0.0
carbon source
Carbon source D-Mannitol 10 mM
-2.3
+0.3
+0.2
-0.0
-0.0
nitrogen source
Adenine (N)
-1.8
-0.4
+0.2
+0.2
+0.1
nitrogen source
Carnitine Hydrochloride (N)
-1.9
+0.1
+0.3
+0.0
-0.1
motility
outer cut, LB soft agar motility assay
-1.1
-0.9
-0.1
+0.4
+0.1
stress
KB-half, Pseudo5 supernatant
+0.1
-0.5
-0.2
+1.4
+0.1
stress
acetate 40 mM
+1.4
+0.6
+0.1
+0.4
-0.1
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