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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_10550 and AO356_10555 are separated by 352 nucleotides
AO356_10555 and AO356_10560 overlap by 11 nucleotides
AO356_10560 and AO356_10565 are separated by 37 nucleotides
AO356_10565 and AO356_10570 are separated by 358 nucleotides
AO356_10550: AO356_10550 - taurine dioxygenase, at 2,384,249 to 2,385,151
_10550
AO356_10555: AO356_10555 - hemolysin secretion protein D, at 2,385,504 to 2,386,871
_10555
AO356_10560: AO356_10560 - ABC transporter, at 2,386,861 to 2,389,017
_10560
AO356_10565: AO356_10565 - channel protein TolC, at 2,389,055 to 2,390,404
_10565
AO356_10570: AO356_10570 - large adhesive protein, at 2,390,763 to 2,405,348
_10570
Group
Condition
AO356
_10550
AO356
_10555
AO356
_10560
AO356
_10565
AO356
_10570
stress
acetate 40 mM
-0.1
-1.3
-1.3
-1.1
-1.3
stress
Cholin acetate 40 mM
-0.0
-1.3
-1.1
-1.2
-1.2
pH
Minimal media pH6
-0.0
-1.5
-1.3
-0.5
-1.2
pH
Minimal media pH6
-0.1
-1.4
-1.2
-0.6
-1.3
stress
Cholin acetate 20 mM
-0.1
-1.0
-1.1
-1.1
-0.9
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.2
-1.0
-1.0
-1.1
-0.9
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.3
-0.9
-1.0
-1.0
-0.9
stress
1-ethyl-3-methylimidazolium acetate 5 mM
-0.0
-0.9
-0.9
-0.8
-0.7
stress
Cephalothin 2 mg/ml
-0.3
-0.7
-0.8
-0.6
-0.6
carbon source
D-Lactate (C)
-0.1
+0.7
+0.5
+0.4
+0.7
carbon source
D-Gluconic Acid (C)
-0.2
+0.7
+0.6
+0.4
+0.7
nitrogen source
Adenine (N)
-0.0
+0.6
+0.7
+0.3
+0.7
nitrogen source
Thymine (N)
-0.1
+0.8
+0.7
+0.3
+0.7
nitrogen source
Inosine (N)
-0.1
+0.9
+0.7
+0.2
+0.7
carbon source
D-Fructose (C)
-0.1
+0.7
+0.6
+0.5
+0.7
nitrogen source
Putrescine (N)
+0.0
+0.7
+0.6
+0.4
+0.7
carbon source
D-Mannose (C)
+0.0
+0.6
+0.7
+0.5
+0.6
carbon source
L-Leucine (C)
-0.0
+0.8
+0.7
+0.5
+0.8
stress
Nickel (II) chloride 0.625 mM
-0.0
+0.6
+0.7
+0.8
+0.7
carbon source
casaminos (C)
+0.0
+0.7
+0.7
+0.6
+0.8
carbon source
L-Lactate (C)
-0.1
+0.8
+0.8
+0.5
+0.8
carbon source
L-Isoleucine (C)
-0.1
+0.9
+0.7
+0.6
+0.7
carbon source
D-Xylose (C)
-0.3
+0.9
+1.0
+0.4
+0.9
carbon source
D,L-Lactate (C)
-0.0
+0.9
+0.8
+0.6
+1.0
carbon source
L-Arabinose (C)
-0.0
+1.1
+1.0
+0.6
+1.0
carbon source
D-Galactose (C)
+0.1
+1.1
+1.0
+0.6
+1.1
carbon source
L-Lactate (C)
+0.0
+1.1
+1.2
+0.6
+1.1
carbon source
Fumarate (C)
+0.0
+1.1
+1.1
+0.6
+1.2
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
+1.5
+1.3
+0.3
+1.2
carbon source
D-Gluconic Acid (C)
-0.2
+1.3
+1.3
+0.8
+1.3
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