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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_10500 and AO356_10505 overlap by 4 nucleotides
AO356_10505 and AO356_10510 are separated by 475 nucleotides
AO356_10510 and AO356_10515 overlap by 20 nucleotides
AO356_10515 and AO356_10520 are separated by 9 nucleotides
AO356_10500: AO356_10500 - multidrug transporter, at 2,372,754 to 2,374,073
_10500
AO356_10505: AO356_10505 - RND transporter, at 2,374,070 to 2,374,849
_10505
AO356_10510: AO356_10510 - hypothetical protein, at 2,375,325 to 2,376,014
_10510
AO356_10515: AO356_10515 - alpha/beta hydrolase, at 2,375,995 to 2,378,445
_10515
AO356_10520: AO356_10520 - NAD-dependent dehydratase, at 2,378,455 to 2,379,897
_10520
Group
Condition
AO356
_10500
AO356
_10505
AO356
_10510
AO356
_10515
AO356
_10520
anaerobic
Nitrate reduction with yeast extract
-0.2
-1.1
-0.5
+0.3
-0.3
stress
Chlorite 0.08 mM
-0.0
-0.9
+0.0
-0.1
-0.1
stress
Rifampicin 0.0016 mg/ml
-0.1
-0.7
+0.1
+0.0
+0.1
survival
4C survival; 1152 hrs
+0.2
-0.3
-0.3
-0.2
-0.1
stress
Cephalothin 2 mg/ml
-0.2
-0.4
+0.0
+0.2
-0.1
stress
Chlorite 0.04 mM
-0.3
-0.4
+0.1
+0.1
+0.1
stress
Aluminum chloride 5 mM
+0.2
-0.8
+0.0
-0.1
+0.2
carbon source
Carbon source Sucrose 5 mM
+0.2
-0.5
+0.1
+0.0
-0.2
motility
outer cut, LB soft agar motility assay
-0.3
+0.6
-0.3
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-0.2
+0.4
-0.2
+0.1
-0.1
carbon source
L-Lysine (C)
-0.0
+0.4
+0.1
-0.2
-0.3
carbon source
Tween 20 (C)
-0.2
+0.4
-0.0
+0.2
-0.2
carbon source
Ethanol (C)
+0.2
+0.4
-0.0
-0.2
-0.2
carbon source
Carbon source D-Mannitol 2.5 mM
+0.3
-0.2
+0.2
+0.2
-0.1
carbon source
D-Sorbitol (C)
+0.1
+0.7
-0.0
+0.1
-0.1
pH
Minimal media pH7
+0.5
+0.3
-0.2
-0.0
+0.0
carbon source
m-Inositol (C)
+0.1
+0.7
-0.0
+0.0
-0.1
pH
Minimal media pH6
+0.5
+0.3
+0.0
-0.1
+0.0
stress
copper (II) chloride 2.5 mM
-0.1
+0.3
+0.2
+0.2
+0.2
stress
Cisplatin 0.0032 mg/ml
+0.2
+0.3
+0.2
-0.0
+0.2
stress
methylglyoxal 0.016 vol%
+0.0
+0.5
+0.1
+0.1
+0.2
carbon source
L-Glutamine (C)
+0.2
+0.6
+0.2
+0.0
-0.1
carbon source
L-Proline (C)
+0.3
+0.5
+0.0
+0.2
-0.1
stress
Paraquat dichloride 0.0625 mg/ml
+0.3
+0.4
+0.0
+0.1
+0.2
pH
Minimal media pH7
+0.6
+0.5
-0.0
+0.0
+0.0
carbon source
D-Xylose (C)
+0.7
+0.4
-0.1
+0.1
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.8
+0.6
-0.0
-0.0
-0.0
pH
Minimal media pH6
+0.7
+0.5
-0.0
+0.1
+0.1
stress
KB-half, Pseudo5 supernatant
+0.5
+1.3
-0.0
+0.2
+0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
+1.6
+0.0
+0.3
+0.7
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