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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_10430 and AO356_10435 are separated by 47 nucleotides
AO356_10435 and AO356_10440 are separated by 205 nucleotides
AO356_10440 and AO356_10445 are separated by 148 nucleotides
AO356_10445 and AO356_10450 are separated by 1 nucleotides
AO356_10430: AO356_10430 - Fis family transcriptional regulator, at 2,353,755 to 2,354,690
_10430
AO356_10435: AO356_10435 - alpha/beta hydrolase, at 2,354,738 to 2,355,319
_10435
AO356_10440: AO356_10440 - hypothetical protein, at 2,355,525 to 2,355,779
_10440
AO356_10445: AO356_10445 - serine protease, at 2,355,928 to 2,356,452
_10445
AO356_10450: AO356_10450 - hypothetical protein, at 2,356,454 to 2,357,215
_10450
Group
Condition
AO356
_10430
AO356
_10435
AO356
_10440
AO356
_10445
AO356
_10450
carbon source
L-Proline (C)
-0.0
-0.3
+0.1
-3.0
-0.1
carbon source
L-Malic (C)
+0.0
+0.1
-0.1
-2.6
-0.1
stress
nitrite 10 mM
-0.3
-0.2
+0.4
-1.9
+0.1
carbon source
D-Trehalose (C)
-0.1
-0.2
-0.2
-1.0
-0.3
nitrogen source
Adenine (N)
-0.3
-0.2
-0.2
-0.7
-0.2
carbon source
Glycerol (C)
-0.1
+0.2
-0.3
-1.0
-0.4
lb
LB
-0.1
-0.3
+0.1
-1.2
-0.0
carbon source
Carbon source D-Mannitol 10 mM
-0.3
-0.1
+0.1
-1.1
-0.1
carbon source
m-Inositol (C)
+0.0
-0.1
-0.1
-1.2
-0.1
stress
Chlorite 0.08 mM
-0.2
-0.4
+0.1
-1.1
+0.1
stress
Fusidic 0.1 mg/ml
-0.1
+0.0
-0.1
-1.5
+0.2
nitrogen source
L-Phenylalanine (N)
+0.1
-0.2
-0.0
-1.3
+0.0
carbon source
L-Lysine (C)
-0.0
-0.3
-0.5
-0.7
+0.1
nitrogen source
Carnitine Hydrochloride (N)
+0.2
+0.3
+0.2
-1.4
-0.1
temperature
LB 30C
-0.2
+0.3
-0.3
-0.6
+0.1
carbon source
Ethanol (C)
-0.2
-0.5
-0.4
+0.6
-0.0
nitrogen source
L-Isoleucine (N)
+0.0
+0.2
-0.5
-0.4
+0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
-0.3
-0.5
+0.5
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.1
+0.3
+0.2
-0.7
motility
outer cut, LB soft agar motility assay
+0.1
-0.2
-0.2
+0.9
-0.6
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
-0.1
-0.2
+0.8
-0.4
stress
Lomefloxacin 0.0005 mM
+0.1
+0.2
-0.7
+0.5
+0.0
carbon source
L-Lysine (C)
-0.1
-0.3
-0.3
+0.7
+0.3
survival
4C survival; 1152 hrs
-0.0
+0.2
-0.2
+0.6
-0.4
anaerobic
Nitrate reduction with yeast extract
+0.0
-0.5
+0.1
+1.0
-0.0
stress
Nickel (II) chloride 0.625 mM
-0.1
+0.2
+0.1
+0.7
-0.3
carbon source
a-Ketoglutaric (C)
-0.1
+0.3
-0.2
+0.8
-0.1
nitrogen source
Urea (N)
+0.0
-0.7
+0.5
+0.2
+0.9
carbon source
acetate (C)
-0.1
+0.3
-0.1
+0.9
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.2
-0.1
+0.5
+1.3
-0.1
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