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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_10420 and AO356_10425 are separated by 494 nucleotides
AO356_10425 and AO356_10430 are separated by 281 nucleotides
AO356_10430 and AO356_10435 are separated by 47 nucleotides
AO356_10435 and AO356_10440 are separated by 205 nucleotides
AO356_10420: AO356_10420 - polar amino acid ABC transporter permease, at 2,351,531 to 2,352,196
_10420
AO356_10425: AO356_10425 - methionine ABC transporter substrate-binding protein, at 2,352,691 to 2,353,473
_10425
AO356_10430: AO356_10430 - Fis family transcriptional regulator, at 2,353,755 to 2,354,690
_10430
AO356_10435: AO356_10435 - alpha/beta hydrolase, at 2,354,738 to 2,355,319
_10435
AO356_10440: AO356_10440 - hypothetical protein, at 2,355,525 to 2,355,779
_10440
Group
Condition
AO356
_10420
AO356
_10425
AO356
_10430
AO356
_10435
AO356
_10440
carbon source
Ethanol (C)
+0.0
-0.1
-0.2
-0.5
-0.4
carbon source
L-Lysine (C)
-0.1
-0.1
-0.0
-0.3
-0.5
stress
KB-half, Pseudo5 supernatant
-0.1
-0.4
-0.1
-0.1
-0.3
carbon source
L-Lysine (C)
-0.1
-0.1
-0.1
-0.3
-0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.0
+0.0
-0.2
-0.3
-0.5
carbon source
Fumarate (C)
-0.2
-0.3
-0.1
+0.1
-0.4
stress
Cholin acetate 40 mM
-0.0
-0.0
-0.2
-0.6
+0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.0
-0.0
-0.3
-0.4
+0.1
nitrogen source
D-Serine (N)
+0.1
-0.0
+0.0
-0.6
-0.1
stress
syringaldehyde 10 mM
-0.0
+0.2
+0.1
-0.3
-0.5
carbon source
Glycerol (C)
-0.2
-0.2
-0.1
+0.2
-0.3
stress
Cobalt chloride 0.08 mM
-0.2
-0.1
-0.1
+0.3
-0.5
nitrogen source
L-Isoleucine (N)
-0.1
+0.0
+0.0
+0.2
-0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
-0.5
-0.1
+0.3
+0.2
stress
nitrite 10 mM
-0.1
-0.2
-0.3
-0.2
+0.4
stress
Chlorite 0.08 mM
-0.0
+0.1
-0.2
-0.4
+0.1
carbon source
Putrescine (C)
+0.0
+0.1
+0.1
-0.4
-0.1
stress
Lomefloxacin 0.0005 mM
+0.1
+0.1
+0.1
+0.2
-0.7
nitrogen source
Urea (N)
-0.1
-0.0
+0.0
-0.7
+0.5
temperature
LB 30C
-0.1
+0.1
-0.2
+0.3
-0.3
carbon source
Carbon source D-Mannitol 2.5 mM
-0.0
-0.2
-0.3
+0.2
+0.2
anaerobic
Nitrate reduction with yeast extract
+0.1
+0.1
+0.0
-0.5
+0.1
stress
Chlorite 0.04 mM
+0.1
+0.1
-0.4
+0.2
-0.1
carbon source
L-Arginine (C)
-0.0
-0.1
-0.1
+0.5
-0.2
stress
Bacitracin 2 mg/ml
+0.1
+0.0
-0.1
-0.4
+0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.0
-0.0
-0.2
-0.1
+0.5
carbon source
succinate (C)
-0.1
+0.0
-0.2
+0.6
-0.0
motility
outer cut, LB soft agar motility assay
-0.3
+0.4
+0.3
-0.1
+0.3
stress
copper (II) chloride 2.5 mM
+0.1
-0.1
+0.2
+0.5
-0.1
stress
nitrate 200 mM
+0.2
+0.0
-0.1
+0.4
+0.4
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AO356_10430
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