Private Fitness
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Gene
Fitness
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_10300 and AO356_10305 are separated by 205 nucleotides
AO356_10305 and AO356_10310 are separated by 41 nucleotides
AO356_10310 and AO356_10315 are separated by 231 nucleotides
AO356_10315 and AO356_10320 are separated by 121 nucleotides
AO356_10300: AO356_10300 - 3-phosphoglycerate dehydrogenase, at 2,323,014 to 2,324,243
_10300
AO356_10305: AO356_10305 - FAD-linked oxidase, at 2,324,449 to 2,325,843
_10305
AO356_10310: AO356_10310 - hypothetical protein, at 2,325,885 to 2,326,550
_10310
AO356_10315: AO356_10315 - DNA-binding protein, at 2,326,782 to 2,327,711
_10315
AO356_10320: AO356_10320 - DNA-binding protein, at 2,327,833 to 2,328,747
_10320
Group
Condition
AO356
_10300
AO356
_10305
AO356
_10310
AO356
_10315
AO356
_10320
carbon source
L-Proline (C)
-5.1
+0.0
-0.1
-0.1
+0.0
carbon source
Tween 20 (C)
-5.4
+0.0
+0.0
+0.0
+0.1
carbon source
L-Lysine (C)
-4.9
+0.1
-0.1
-0.1
+0.0
carbon source
L-Glutamic (C)
-5.1
+0.1
+0.1
+0.1
-0.0
carbon source
L-Malic (C)
-4.6
-0.1
-0.0
-0.0
-0.1
carbon source
D,L-Lactate (C)
-4.5
-0.2
-0.0
+0.1
-0.0
carbon source
L-Arabinose (C)
-4.3
-0.3
+0.0
-0.2
+0.0
carbon source
L-Isoleucine (C)
-4.7
-0.1
+0.2
+0.2
-0.1
carbon source
acetate (C)
-4.4
-0.0
+0.2
-0.2
-0.2
carbon source
L-Glutamine (C)
-4.2
-0.0
-0.2
-0.0
-0.1
carbon source
D-Lactate (C)
-4.3
-0.1
+0.0
-0.1
-0.0
carbon source
L-Glutamic (C)
-4.8
+0.1
-0.0
+0.2
+0.0
nitrogen source
Putrescine (N)
-4.3
+0.0
-0.0
-0.0
-0.1
carbon source
L-Proline (C)
-4.4
+0.1
-0.1
+0.1
-0.0
nitrogen source
Adenosine (N)
-4.1
-0.1
-0.0
-0.0
-0.0
carbon source
L-Lysine (C)
-4.1
-0.1
-0.1
-0.1
+0.1
carbon source
succinate (C)
-4.4
+0.0
-0.0
+0.1
-0.0
carbon source
L-Asparagine (C)
-4.1
-0.0
-0.1
+0.1
-0.1
carbon source
a-Ketoglutaric (C)
-4.4
+0.0
+0.1
-0.0
+0.0
carbon source
L-Malic (C)
-4.2
-0.0
-0.0
+0.0
+0.0
carbon source
acetate (C)
-4.0
-0.1
-0.1
-0.1
+0.1
carbon source
D-Trehalose (C)
-4.4
-0.0
+0.2
+0.0
+0.1
carbon source
Carbon source Sucrose 10 mM
-4.0
-0.0
-0.0
+0.1
-0.1
carbon source
L-Arabinose (C)
-4.1
+0.0
+0.0
+0.0
-0.0
carbon source
Tween 20 (C)
-4.1
+0.1
+0.2
-0.0
-0.1
carbon source
L-Histidine (C)
-4.0
-0.0
+0.0
+0.1
+0.0
carbon source
L-Leucine (C)
-3.9
-0.1
+0.3
+0.1
-0.1
pH
Minimal media pH6
-3.7
+0.2
+0.0
-0.2
+0.0
carbon source
L-Glutamine (C)
-3.9
-0.1
+0.1
+0.2
+0.1
carbon source
m-Inositol (C)
-3.6
+0.2
+0.2
+0.1
-0.1
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