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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_10180 and AO356_10185 are separated by 269 nucleotides
AO356_10185 and AO356_10190 are separated by 249 nucleotides
AO356_10190 and AO356_10195 are separated by 20 nucleotides
AO356_10195 and AO356_10200 overlap by 4 nucleotides
AO356_10180: AO356_10180 - hypothetical protein, at 2,297,345 to 2,297,728
_10180
AO356_10185: AO356_10185 - glutamate--cysteine ligase, at 2,297,998 to 2,299,581
_10185
AO356_10190: AO356_10190 - taurine ABC transporter substrate-binding protein, at 2,299,831 to 2,300,808
_10190
AO356_10195: AO356_10195 - taurine transporter ATP-binding subunit, at 2,300,829 to 2,301,623
_10195
AO356_10200: AO356_10200 - taurine ABC transporter permease, at 2,301,620 to 2,302,459
_10200
Group
Condition
AO356
_10180
AO356
_10185
AO356
_10190
AO356
_10195
AO356
_10200
carbon source
L-Histidine (C)
-0.4
-3.3
+0.1
N.D.
-0.1
carbon source
L-Histidine (C)
-0.5
-3.6
+0.3
N.D.
+0.1
stress
methylglyoxal 0.016 vol%
+0.5
-3.6
-0.4
N.D.
-0.2
carbon source
L-Lysine (C)
-0.7
-2.8
+0.0
N.D.
+0.0
stress
acetate 40 mM
-0.2
-3.1
-0.0
N.D.
+0.0
stress
Cephalothin 2 mg/ml
+0.0
-2.9
-0.3
N.D.
-0.1
carbon source
L-Lysine (C)
-0.0
-3.2
+0.1
N.D.
-0.1
stress
Cholin acetate 20 mM
-0.1
-3.0
-0.1
N.D.
-0.0
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.6
-2.5
-0.1
N.D.
+0.0
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.3
-2.4
-0.3
N.D.
+0.0
stress
syringaldehyde 10 mM
-0.2
-2.5
-0.2
N.D.
-0.0
carbon source
D-Lactate (C)
-0.5
-2.1
-0.2
N.D.
-0.0
carbon source
acetate (C)
-0.1
-2.6
-0.1
N.D.
+0.0
carbon source
L-Isoleucine (C)
-0.2
-2.6
+0.1
N.D.
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.3
-1.8
-0.4
N.D.
-0.2
pH
Minimal media pH9
+0.1
-2.9
-0.0
N.D.
+0.2
stress
Cobalt chloride 0.08 mM
-0.2
-2.4
-0.1
N.D.
+0.2
stress
Cobalt chloride 0.08 mM
-0.3
-2.1
+0.1
N.D.
+0.0
anaerobic
Nitrate reduction with yeast extract
-0.4
-2.0
+0.3
N.D.
-0.1
stress
1-ethyl-3-methylimidazolium acetate 5 mM
+0.2
-2.5
+0.1
N.D.
+0.1
nitrogen source
Uridine (N)
+0.1
-2.3
+0.0
N.D.
+0.1
carbon source
acetate (C)
+0.1
-2.3
-0.0
N.D.
+0.2
carbon source
casaminos (C)
+0.2
-2.3
+0.1
N.D.
+0.0
stress
nitrite 10 mM
+0.5
-2.7
+0.0
N.D.
+0.1
nitrogen source
Carnitine Hydrochloride (N)
+0.3
-2.1
+0.1
N.D.
-0.1
stress
Sisomicin 0.001 mg/ml
+0.4
-1.9
-0.2
N.D.
-0.1
survival
4C survival; 360 hrs
-0.0
-2.4
+0.2
N.D.
+0.4
motility
outer cut, LB soft agar motility assay
-0.3
-1.5
+0.3
N.D.
-0.3
stress
Nalidixic 0.004 mg/ml
-0.5
+2.1
-0.3
N.D.
-0.0
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
+2.9
-0.4
N.D.
+0.0
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