Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_10180 and AO356_10185 are separated by 269 nucleotidesAO356_10185 and AO356_10190 are separated by 249 nucleotidesAO356_10190 and AO356_10195 are separated by 20 nucleotidesAO356_10195 and AO356_10200 overlap by 4 nucleotides AO356_10180: AO356_10180 - hypothetical protein, at 2,297,345 to 2,297,728 _10180 AO356_10185: AO356_10185 - glutamate--cysteine ligase, at 2,297,998 to 2,299,581 _10185 AO356_10190: AO356_10190 - taurine ABC transporter substrate-binding protein, at 2,299,831 to 2,300,808 _10190 AO356_10195: AO356_10195 - taurine transporter ATP-binding subunit, at 2,300,829 to 2,301,623 _10195 AO356_10200: AO356_10200 - taurine ABC transporter permease, at 2,301,620 to 2,302,459 _10200
Group Condition AO356_10180 AO356_10185 AO356_10190 AO356_10195 AO356_10200
carbon source L-Histidine (C) -0.4 -3.3 +0.1 N.D. -0.1
carbon source L-Histidine (C) -0.5 -3.6 +0.3 N.D. +0.1
stress methylglyoxal 0.016 vol% +0.5 -3.6 -0.4 N.D. -0.2
carbon source L-Lysine (C) -0.7 -2.8 +0.0 N.D. +0.0
stress acetate 40 mM -0.2 -3.1 -0.0 N.D. +0.0
stress Cephalothin 2 mg/ml +0.0 -2.9 -0.3 N.D. -0.1
carbon source L-Lysine (C) -0.0 -3.2 +0.1 N.D. -0.1
stress Cholin acetate 20 mM -0.1 -3.0 -0.1 N.D. -0.0
stress 1-ethyl-3-methylimidazolium acetate 20 mM -0.6 -2.5 -0.1 N.D. +0.0
stress 1-ethyl-3-methylimidazolium acetate 10 mM -0.3 -2.4 -0.3 N.D. +0.0
stress syringaldehyde 10 mM -0.2 -2.5 -0.2 N.D. -0.0
carbon source D-Lactate (C) -0.5 -2.1 -0.2 N.D. -0.0
carbon source acetate (C) -0.1 -2.6 -0.1 N.D. +0.0
carbon source L-Isoleucine (C) -0.2 -2.6 +0.1 N.D. -0.1
stress 1-ethyl-3-methylimidazolium lysine 10 mM -0.3 -1.8 -0.4 N.D. -0.2
pH Minimal media pH9 +0.1 -2.9 -0.0 N.D. +0.2
stress Cobalt chloride 0.08 mM -0.2 -2.4 -0.1 N.D. +0.2
stress Cobalt chloride 0.08 mM -0.3 -2.1 +0.1 N.D. +0.0
anaerobic Nitrate reduction with yeast extract -0.4 -2.0 +0.3 N.D. -0.1
stress 1-ethyl-3-methylimidazolium acetate 5 mM +0.2 -2.5 +0.1 N.D. +0.1
nitrogen source Uridine (N) +0.1 -2.3 +0.0 N.D. +0.1
carbon source acetate (C) +0.1 -2.3 -0.0 N.D. +0.2
carbon source casaminos (C) +0.2 -2.3 +0.1 N.D. +0.0
stress nitrite 10 mM +0.5 -2.7 +0.0 N.D. +0.1
nitrogen source Carnitine Hydrochloride (N) +0.3 -2.1 +0.1 N.D. -0.1
stress Sisomicin 0.001 mg/ml +0.4 -1.9 -0.2 N.D. -0.1
survival 4C survival; 360 hrs -0.0 -2.4 +0.2 N.D. +0.4
motility outer cut, LB soft agar motility assay -0.3 -1.5 +0.3 N.D. -0.3
stress Nalidixic 0.004 mg/ml -0.5 +2.1 -0.3 N.D. -0.0
stress Doxycycline hyclate 0.0001 mg/ml +0.1 +2.9 -0.4 N.D. +0.0
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