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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_09795 and AO356_09800 are separated by 9 nucleotides
AO356_09800 and AO356_09805 are separated by 42 nucleotides
AO356_09805 and AO356_09810 overlap by 1 nucleotides
AO356_09810 and AO356_09815 overlap by 1 nucleotides
AO356_09795: AO356_09795 - imidazole glycerol phosphate synthase subunit HisF, at 2,220,811 to 2,221,581
_09795
AO356_09800: AO356_09800 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16)
(from data)
, at 2,221,591 to 2,222,328
_09800
AO356_09805: AO356_09805 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 2,222,371 to 2,222,625
_09805
AO356_09810: AO356_09810 - imidazole glycerol phosphate synthase subunit HisH, at 2,222,625 to 2,223,263
_09810
AO356_09815: AO356_09815 - imidazoleglycerol-phosphate dehydratase, at 2,223,263 to 2,223,856
_09815
Group
Condition
AO356
_09795
AO356
_09800
AO356
_09805
AO356
_09810
AO356
_09815
nitrogen source
nitrite (N)
-3.5
-5.2
-0.1
-5.5
-6.0
nitrogen source
Uridine (N)
-3.3
-5.0
-0.1
-5.6
-5.8
nitrogen source
D-Glucosamine Hydrochloride (N)
-3.4
-5.1
-0.0
-5.4
-5.8
nitrogen source
Adenine (N)
-3.4
-4.7
-0.0
-5.7
-5.7
nitrogen source
Adenosine (N)
-3.4
-5.1
-0.2
-5.2
-5.5
carbon source
Tween 20 (C)
-3.5
-5.3
-0.2
-4.7
-5.5
carbon source
L-Glutamine (C)
-3.4
-4.8
-0.1
-5.0
-5.6
nitrogen source
Ammonium chloride (N)
-3.4
-5.1
-0.4
-4.7
-5.3
carbon source
m-Inositol (C)
-3.5
-4.3
-0.4
-5.1
-5.5
carbon source
L-Proline (C)
-3.4
-4.9
+0.1
-5.1
-5.4
nitrogen source
Carnitine Hydrochloride (N)
-3.3
-4.9
+0.0
-5.1
-5.4
pH
Minimal media pH8
-2.4
-5.1
+0.1
-5.0
-6.3
carbon source
L-Isoleucine (C)
-3.3
-4.9
-0.1
-5.1
-5.4
pH
Minimal media pH7
-3.2
-4.3
+0.3
-5.5
-5.9
carbon source
D-Sorbitol (C)
-3.4
-4.9
+0.4
-5.1
-5.5
carbon source
D-Alanine (C)
-3.3
-4.9
+0.1
-5.1
-5.2
nitrogen source
L-Leucine (N)
-3.2
-4.8
-0.1
-5.0
-5.2
carbon source
L-Glutamine (C)
-3.5
-4.4
+0.1
-5.3
-5.4
nitrogen source
Thymine (N)
-3.4
-4.5
+0.2
-5.5
-5.1
nitrogen source
L-Isoleucine (N)
-3.2
-4.3
-0.6
-4.8
-5.4
carbon source
Uridine (C)
-3.4
-4.7
+0.1
-4.8
-5.4
pH
Minimal media pH6
-3.3
-4.3
-0.6
-5.0
-5.0
carbon source
Tween 20 (C)
-3.4
-4.6
-0.5
-4.6
-5.1
nitrogen source
Inosine (N)
-2.6
-4.3
-0.2
-5.2
-5.9
carbon source
D-Glucosamine Hydrochloride (C)
-3.3
-4.6
+0.0
-5.1
-5.3
carbon source
L-Proline (C)
-2.4
-4.9
-0.0
-5.1
-5.8
nitrogen source
D-Alanine (N)
-3.1
-4.7
-0.0
-4.9
-5.5
carbon source
L-Glutamic (C)
-3.3
-4.2
+0.1
-5.0
-5.6
carbon source
Glycerol (C)
-3.3
-4.5
+0.4
-4.7
-5.2
carbon source
m-Inositol (C)
-3.3
-4.4
+0.8
-5.0
-4.8
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