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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_09730 and AO356_09735 are separated by 85 nucleotides
AO356_09735 and AO356_09740 overlap by 4 nucleotides
AO356_09740 and AO356_09745 are separated by 577 nucleotides
AO356_09745 and AO356_09750 are separated by 76 nucleotides
AO356_09730: AO356_09730 - nitrogen regulation protein NR(I), at 2,208,422 to 2,209,858
_09730
AO356_09735: AO356_09735 - transposase, at 2,209,944 to 2,210,780
_09735
AO356_09740: AO356_09740 - transposase, at 2,210,777 to 2,211,079
_09740
AO356_09745: AO356_09745 - hypothetical protein, at 2,211,657 to 2,212,019
_09745
AO356_09750: AO356_09750 - rRNA methylase, at 2,212,096 to 2,212,551
_09750
Group
Condition
AO356
_09730
AO356
_09735
AO356
_09740
AO356
_09745
AO356
_09750
nitrogen source
Inosine (N)
-6.3
N.D.
N.D.
N.D.
-0.1
nitrogen source
Uridine (N)
-6.3
N.D.
N.D.
N.D.
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-5.9
N.D.
N.D.
N.D.
+0.0
nitrogen source
nitrite (N)
-6.0
N.D.
N.D.
N.D.
+0.1
nitrogen source
L-Leucine (N)
-5.4
N.D.
N.D.
N.D.
-0.3
nitrogen source
Urea (N)
-5.5
N.D.
N.D.
N.D.
-0.1
nitrogen source
Thymine (N)
-5.5
N.D.
N.D.
N.D.
-0.0
nitrogen source
Gly-Glu (N)
-5.2
N.D.
N.D.
N.D.
-0.1
nitrogen source
Carnitine Hydrochloride (N)
-5.0
N.D.
N.D.
N.D.
-0.2
nitrogen source
Putrescine (N)
-5.4
N.D.
N.D.
N.D.
+0.4
nitrogen source
Cytosine (N)
-5.1
N.D.
N.D.
N.D.
+0.1
nitrogen source
Adenine (N)
-5.0
N.D.
N.D.
N.D.
+0.2
nitrogen source
D-Serine (N)
-4.9
N.D.
N.D.
N.D.
+0.4
nitrogen source
L-Phenylalanine (N)
-4.6
N.D.
N.D.
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
-4.1
N.D.
N.D.
N.D.
+0.1
nitrogen source
D-Alanine (N)
-3.6
N.D.
N.D.
N.D.
+0.3
nitrogen source
L-tyrosine (N)
-2.8
N.D.
N.D.
N.D.
-0.0
carbon source
L-Alanine (C)
-2.2
N.D.
N.D.
N.D.
-0.1
carbon source
L-Malic (C)
-2.0
N.D.
N.D.
N.D.
-0.1
carbon source
L-Malic (C)
-1.7
N.D.
N.D.
N.D.
-0.3
nitrogen source
Adenosine (N)
-2.1
N.D.
N.D.
N.D.
+0.4
carbon source
succinate (C)
-1.4
N.D.
N.D.
N.D.
-0.1
carbon source
L-Lactate (C)
-1.5
N.D.
N.D.
N.D.
+0.1
pH
Minimal media pH9
-1.4
N.D.
N.D.
N.D.
+0.1
pH
Minimal media pH6
-1.4
N.D.
N.D.
N.D.
+0.1
pH
Minimal media pH6
-1.4
N.D.
N.D.
N.D.
+0.2
carbon source
Tween 20 (C)
-1.3
N.D.
N.D.
N.D.
+0.3
carbon source
Fumarate (C)
-1.1
N.D.
N.D.
N.D.
+0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+1.4
N.D.
N.D.
N.D.
+0.0
stress
KB-half, Pseudo5 supernatant
+1.4
N.D.
N.D.
N.D.
+0.4
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