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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_09710 and AO356_09715 are separated by 190 nucleotides
AO356_09715 and AO356_09720 overlap by 4 nucleotides
AO356_09720 and AO356_09725 are separated by 253 nucleotides
AO356_09725 and AO356_09730 overlap by 4 nucleotides
AO356_09710: AO356_09710 - chorismate mutase, at 2,205,194 to 2,205,757
_09710
AO356_09715: AO356_09715 - hypothetical protein, at 2,205,948 to 2,206,466
_09715
AO356_09720: AO356_09720 - penicillin-binding protein, at 2,206,463 to 2,207,086
_09720
AO356_09725: AO356_09725 - histidine kinase, at 2,207,340 to 2,208,425
_09725
AO356_09730: AO356_09730 - nitrogen regulation protein NR(I), at 2,208,422 to 2,209,858
_09730
Group
Condition
AO356
_09710
AO356
_09715
AO356
_09720
AO356
_09725
AO356
_09730
nitrogen source
nitrite (N)
+0.0
-0.2
-0.2
-6.2
-6.0
nitrogen source
Uridine (N)
-0.1
-0.1
-0.2
-5.0
-6.3
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.0
+0.0
-5.5
-5.9
nitrogen source
Inosine (N)
+0.2
+0.1
+0.1
-5.2
-6.3
nitrogen source
Thymine (N)
+0.0
+0.1
+0.1
-5.3
-5.5
nitrogen source
Putrescine (N)
-0.2
-0.1
-0.2
-4.7
-5.4
nitrogen source
Gly-Glu (N)
-0.0
+0.1
+0.1
-5.3
-5.2
nitrogen source
L-Leucine (N)
+0.1
-0.1
-0.1
-4.7
-5.4
nitrogen source
Urea (N)
+0.3
+0.2
+0.2
-5.0
-5.5
nitrogen source
Carnitine Hydrochloride (N)
-0.1
-0.0
+0.1
-4.6
-5.0
nitrogen source
Cytosine (N)
-0.0
-0.0
-0.0
-4.0
-5.1
nitrogen source
D-Serine (N)
-0.1
+0.2
+0.1
-4.5
-4.9
nitrogen source
L-Isoleucine (N)
-0.1
-0.1
-0.1
-4.6
-4.1
nitrogen source
D-Alanine (N)
-0.1
-0.1
-0.0
-4.9
-3.6
nitrogen source
Adenine (N)
+0.1
+0.2
+0.1
-3.9
-5.0
nitrogen source
L-Phenylalanine (N)
+0.1
+0.1
+0.1
-3.8
-4.6
nitrogen source
L-tyrosine (N)
+0.2
+0.1
-0.1
-4.1
-2.8
carbon source
L-Alanine (C)
-0.2
+0.1
-0.0
-1.7
-2.2
carbon source
L-Malic (C)
-0.0
+0.0
-0.1
-1.5
-2.0
nitrogen source
Adenosine (N)
-0.1
-0.0
-0.1
-0.9
-2.1
carbon source
L-Malic (C)
-0.1
-0.0
-0.0
-1.1
-1.7
pH
Minimal media pH9
+0.0
-0.1
-0.1
-1.5
-1.4
carbon source
Tween 20 (C)
-0.1
+0.2
-0.0
-1.4
-1.3
carbon source
L-Lactate (C)
+0.1
-0.1
-0.1
-1.0
-1.5
pH
Minimal media pH6
-0.1
-0.0
+0.1
-0.8
-1.4
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.0
-0.1
-0.1
-1.1
-0.9
pH
Minimal media pH6
+0.1
-0.0
+0.1
-0.8
-1.4
carbon source
Tween 20 (C)
+0.1
+0.2
-0.0
-0.8
-1.1
stress
KB-half, Pseudo5 supernatant
+0.2
+0.1
+0.3
-0.1
+1.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
+0.2
+0.3
-0.0
+1.4
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