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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_09370 and AO356_09375 are separated by 33 nucleotides
AO356_09375 and AO356_09380 are separated by 350 nucleotides
AO356_09380 and AO356_09385 are separated by 10 nucleotides
AO356_09385 and AO356_09390 are separated by 179 nucleotides
AO356_09370: AO356_09370 - glutamate synthase, at 2,117,678 to 2,119,096
_09370
AO356_09375: AO356_09375 - glutamate synthase, at 2,119,130 to 2,123,578
_09375
AO356_09380: AO356_09380 - cell division protein, at 2,123,929 to 2,125,503
_09380
AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614
_09385
AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312
_09390
Group
Condition
AO356
_09370
AO356
_09375
AO356
_09380
AO356
_09385
AO356
_09390
nitrogen source
nitrite (N)
-4.7
-5.1
+0.2
N.D.
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-4.7
-4.7
-0.1
N.D.
N.D.
carbon source
D-Alanine (C)
-4.9
-4.6
-0.0
N.D.
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
-4.7
-4.9
+0.2
N.D.
N.D.
carbon source
Tween 20 (C)
-4.5
-4.8
-0.2
N.D.
N.D.
pH
Minimal media pH8
-5.2
-4.5
+0.3
N.D.
N.D.
nitrogen source
Cytosine (N)
-4.7
-4.5
-0.0
N.D.
N.D.
nitrogen source
Uridine (N)
-4.2
-4.9
+0.0
N.D.
N.D.
nitrogen source
Carnitine Hydrochloride (N)
-4.4
-4.7
+0.0
N.D.
N.D.
carbon source
D-Trehalose (C)
-4.7
-4.9
+0.4
N.D.
N.D.
carbon source
Inosine (C)
-4.5
-4.7
+0.1
N.D.
N.D.
carbon source
L-Alanine (C)
-4.2
-4.8
+0.1
N.D.
N.D.
carbon source
m-Inositol (C)
-4.5
-4.4
-0.1
N.D.
N.D.
carbon source
m-Inositol (C)
-4.4
-4.7
+0.1
N.D.
N.D.
nitrogen source
Thymine (N)
-4.6
-4.5
+0.1
N.D.
N.D.
carbon source
NAG (C)
-4.4
-4.9
+0.4
N.D.
N.D.
carbon source
D-Sorbitol (C)
-4.5
-4.8
+0.4
N.D.
N.D.
nitrogen source
Adenosine (N)
-4.2
-5.0
+0.3
N.D.
N.D.
carbon source
Glycerol (C)
-4.5
-4.8
+0.3
N.D.
N.D.
nitrogen source
Ammonium chloride (N)
-4.3
-4.8
+0.3
N.D.
N.D.
pH
Minimal media pH8
-4.4
-4.5
+0.2
N.D.
N.D.
nitrogen source
Adenine (N)
-4.3
-4.7
+0.3
N.D.
N.D.
pH
Minimal media pH7
-4.5
-4.4
+0.3
N.D.
N.D.
carbon source
D-Trehalose (C)
-4.5
-4.6
+0.5
N.D.
N.D.
carbon source
Glycerol (C)
-4.3
-4.5
+0.3
N.D.
N.D.
carbon source
Uridine (C)
-4.3
-4.5
+0.3
N.D.
N.D.
carbon source
D-Sorbitol (C)
-3.9
-4.9
+0.3
N.D.
N.D.
carbon source
Carbon source Sucrose 10 mM
-4.4
-4.6
+0.8
N.D.
N.D.
carbon source
Carbon source Sucrose 5 mM
-4.1
-4.3
+0.7
N.D.
N.D.
nitrogen source
D-Serine (N)
-4.2
-4.1
+1.0
N.D.
N.D.
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