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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_09235 and AO356_09240 are separated by 251 nucleotides
AO356_09240 and AO356_09245 are separated by 12 nucleotides
AO356_09245 and AO356_09250 overlap by 4 nucleotides
AO356_09250 and AO356_09255 overlap by 4 nucleotides
AO356_09235: AO356_09235 - hypothetical protein, at 2,086,832 to 2,087,365
_09235
AO356_09240: AO356_09240 - hydroxyproline-2-epimerase, at 2,087,617 to 2,088,615
_09240
AO356_09245: AO356_09245 - ABC transporter permease, at 2,088,628 to 2,089,479
_09245
AO356_09250: AO356_09250 - ABC transporter permease, at 2,089,476 to 2,090,324
_09250
AO356_09255: AO356_09255 - glycine/betaine ABC transporter, at 2,090,321 to 2,091,439
_09255
Group
Condition
AO356
_09235
AO356
_09240
AO356
_09245
AO356
_09250
AO356
_09255
anaerobic
Nitrate reduction with yeast extract
-0.3
+0.1
-0.7
+0.4
-0.4
motility
outer cut, LB soft agar motility assay
-0.9
-0.3
-0.1
+0.4
-0.0
stress
Cisplatin 0.0032 mg/ml
+0.2
-0.1
-0.2
-0.5
-0.2
stress
methylglyoxal 0.016 vol%
-0.3
-0.2
-0.4
+0.0
+0.1
nitrogen source
Adenosine (N)
-0.2
-0.2
-0.3
-0.0
+0.2
carbon source
Carbon source D-Glucose 10 mM
+0.2
-0.2
-0.5
+0.0
-0.1
stress
KB-half, Pseudo5 supernatant
-0.4
+0.1
+0.1
-0.2
-0.1
stress
copper (II) chloride 2.5 mM
+0.1
+0.1
-0.6
-0.0
-0.1
stress
Rifampicin 0.0016 mg/ml
-0.1
-0.3
+0.3
-0.1
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.1
-0.1
-0.5
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
+0.2
+0.3
-0.6
-0.2
-0.0
nitrogen source
L-Phenylalanine (N)
-0.3
-0.3
+0.3
-0.0
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
-0.2
-0.5
+0.0
+0.2
stress
Chlorite 0.08 mM
+0.1
+0.3
-0.0
-0.5
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.0
+0.3
-0.5
+0.1
-0.1
carbon source
Carnitine Hydrochloride (C)
-0.2
-0.3
+0.3
+0.2
-0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
-0.1
-0.2
+0.3
+0.2
motility
outer cut, LB soft agar motility assay
-0.0
+0.0
+0.2
-0.5
+0.2
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.3
+0.0
+0.3
-0.1
+0.3
nitrogen source
Gly-Glu (N)
+0.1
-0.3
+0.3
+0.2
-0.0
stress
Chlorite 0.04 mM
-0.1
+0.1
+0.3
+0.3
-0.3
carbon source
Carbon source D-Mannitol 10 mM
+0.2
+0.1
-0.3
-0.1
+0.2
stress
Sisomicin 0.001 mg/ml
-0.0
-0.3
+0.4
+0.5
-0.2
carbon source
L-Lysine (C)
+0.1
+0.2
+0.6
-0.6
+0.2
carbon source
Carbon source Sucrose 5 mM
+0.3
+0.1
-0.2
+0.2
+0.2
motility
outer cut, LB soft agar motility assay
-0.1
+0.0
-0.1
-0.0
+0.8
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.3
-0.3
+0.1
+0.3
+0.2
temperature
LB 20C
-0.1
+0.2
+0.4
+0.3
-0.0
carbon source
L-Lysine (C)
-0.1
+0.2
-0.0
+0.6
+0.1
carbon source
D-Trehalose (C)
+0.1
+0.2
+0.4
+0.1
+0.3
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