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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_09220 and AO356_09225 overlap by 1 nucleotides
AO356_09225 and AO356_09230 are separated by 42 nucleotides
AO356_09230 and AO356_09235 are separated by 804 nucleotides
AO356_09235 and AO356_09240 are separated by 251 nucleotides
AO356_09220: AO356_09220 - 3-ketoacyl-ACP reductase, at 2,083,584 to 2,084,312
_09220
AO356_09225: AO356_09225 - 3-oxoacyl-ACP synthase, at 2,084,312 to 2,085,538
_09225
AO356_09230: AO356_09230 - excinuclease, at 2,085,581 to 2,086,027
_09230
AO356_09235: AO356_09235 - hypothetical protein, at 2,086,832 to 2,087,365
_09235
AO356_09240: AO356_09240 - hydroxyproline-2-epimerase, at 2,087,617 to 2,088,615
_09240
Group
Condition
AO356
_09220
AO356
_09225
AO356
_09230
AO356
_09235
AO356
_09240
anaerobic
Nitrate reduction with yeast extract
-1.4
-1.0
+0.1
-0.3
+0.1
motility
outer cut, LB soft agar motility assay
-0.5
-0.1
-0.2
-0.9
-0.3
stress
perchlorate 75 mM
-0.5
-0.9
-0.1
-0.3
-0.1
carbon source
Fumarate (C)
-0.5
-0.5
-0.2
-0.3
+0.1
nitrogen source
L-Phenylalanine (N)
-0.2
-0.3
-0.1
-0.3
-0.3
stress
methylglyoxal 0.016 vol%
-0.2
-0.2
-0.3
-0.3
-0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.5
-0.6
-0.1
+0.3
-0.3
carbon source
Fumarate (C)
-0.6
-0.4
-0.0
-0.1
+0.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
-0.6
-0.8
+0.0
+0.3
stress
Ceftazidime 0.2 mg/ml
+0.2
+0.0
-0.7
-0.1
-0.3
stress
Cisplatin 0.0032 mg/ml
-0.2
-0.5
-0.3
-0.1
+0.2
carbon source
NAG (C)
-0.2
-0.5
-0.1
-0.1
+0.2
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.2
-0.4
+0.3
-0.3
+0.0
carbon source
Carbon source Sucrose 10 mM
-0.4
-0.3
+0.4
-0.1
-0.2
survival
4C survival; 1152 hrs
+0.2
-0.4
-0.3
-0.0
+0.2
stress
Cobalt chloride 0.08 mM
+0.2
-0.5
-0.2
+0.1
+0.2
motility
outer cut, LB soft agar motility assay
+0.7
-0.5
-0.3
-0.1
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
-0.2
-0.3
+0.2
+0.3
lb
LB
-0.6
+0.2
+0.0
+0.1
+0.2
stress
Nickel (II) chloride 0.625 mM
+0.3
+0.1
+0.3
-0.1
-0.3
stress
Sisomicin 0.001 mg/ml
+0.0
+0.4
+0.3
-0.0
-0.3
stress
Benzalkonium Chloride 0.016 mg/ml
+1.0
+0.2
-0.2
-0.2
-0.1
stress
KB-half, Pseudo5 supernatant
+1.0
+0.5
-0.5
-0.4
+0.1
stress
nitrate 200 mM
+0.4
-0.2
+0.3
+0.1
+0.2
stress
Rifampicin 0.0016 mg/ml
+0.7
+0.4
-0.1
-0.1
-0.3
stress
Bacitracin 2 mg/ml
+0.5
+0.5
-0.2
+0.2
-0.2
stress
Lomefloxacin 0.0005 mM
+0.3
+0.4
+0.3
-0.0
-0.2
carbon source
m-Inositol (C)
+0.3
-0.2
+0.5
+0.0
+0.2
stress
Nalidixic 0.004 mg/ml
+0.4
+0.4
+0.3
+0.1
-0.1
stress
Rifampicin 0.0024 mg/ml
+0.8
+0.4
-0.0
-0.0
-0.0
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