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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_09180 and AO356_09185 overlap by 4 nucleotides
AO356_09185 and AO356_09190 overlap by 17 nucleotides
AO356_09190 and AO356_09195 are separated by 23 nucleotides
AO356_09195 and AO356_09200 overlap by 4 nucleotides
AO356_09180: AO356_09180 - thioesterase, at 2,076,105 to 2,076,530
_09180
AO356_09185: AO356_09185 - hypothetical protein, at 2,076,527 to 2,077,120
_09185
AO356_09190: AO356_09190 - hypothetical protein, at 2,077,104 to 2,079,443
_09190
AO356_09195: AO356_09195 - FAD-dependent oxidoreductase, at 2,079,467 to 2,080,726
_09195
AO356_09200: AO356_09200 - methyltransferase, at 2,080,723 to 2,081,451
_09200
Group
Condition
AO356
_09180
AO356
_09185
AO356
_09190
AO356
_09195
AO356
_09200
anaerobic
Nitrate reduction with yeast extract
-0.2
-2.4
-1.7
-1.5
-1.0
stress
copper (II) chloride 2.5 mM
-0.3
-3.7
+0.1
+0.2
+0.1
carbon source
Carbon source Sucrose 10 mM
+0.2
-2.8
+0.1
+0.2
+0.0
stress
Cisplatin 0.0032 mg/ml
-0.2
-1.9
-0.0
+0.1
-0.3
motility
outer cut, LB soft agar motility assay
-0.6
-1.8
+0.2
-0.1
+0.1
stress
Sisomicin 0.001 mg/ml
+0.5
-1.3
-1.0
-0.1
-0.3
nitrogen source
Urea (N)
-0.0
-1.8
-0.2
-0.0
+0.0
carbon source
D-Ribose (C)
-0.1
-1.6
-0.4
+0.0
-0.0
carbon source
Fumarate (C)
-0.8
-0.7
-0.3
+0.2
-0.4
stress
Aluminum chloride 5 mM
-0.4
-1.4
-0.4
+0.4
-0.1
carbon source
Fumarate (C)
-0.5
-0.9
-0.0
-0.2
-0.3
stress
Ceftazidime 0.2 mg/ml
+0.2
-1.6
-0.2
-0.1
-0.1
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.3
-0.9
-0.5
-0.0
-0.1
stress
KB-half, Pseudo5 supernatant
+0.1
-1.0
+0.0
-0.9
+0.0
carbon source
L-Lactate (C)
-0.3
-0.6
-0.2
-0.1
-0.3
nitrogen source
Adenosine (N)
-0.1
-1.7
+0.1
+0.2
+0.0
carbon source
Carbon source D,L-Lactate 10 mM
-0.3
-1.0
-0.1
-0.2
+0.2
stress
Cobalt chloride 0.08 mM
-0.5
-0.2
+0.2
-0.2
-0.7
carbon source
D-Fructose (C)
+0.1
-1.4
-0.2
+0.3
-0.0
stress
Nickel (II) chloride 0.625 mM
-0.7
-0.3
+0.1
+0.1
-0.5
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-1.6
+0.0
+0.4
+0.0
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.3
-0.8
+0.1
-0.2
-0.3
carbon source
Carbon source Sucrose 2.5 mM
-0.3
-0.4
-0.4
+0.4
-0.1
carbon source
Carbon source Sucrose 5 mM
-0.5
+0.8
-0.1
-0.2
+0.0
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.2
+0.8
-0.3
-0.2
-0.2
carbon source
L-Proline (C)
+0.2
+0.6
-0.3
-0.4
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
+0.6
-0.3
+0.2
+0.2
+0.4
stress
Benzalkonium Chloride 0.016 mg/ml
+0.7
-0.2
+0.2
+0.6
+0.3
stress
Rifampicin 0.0016 mg/ml
+0.3
+0.6
+0.1
+0.3
+0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.4
+1.4
+0.1
+0.3
+0.1
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