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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_08895 and AO356_08900 are separated by 8 nucleotides
AO356_08900 and AO356_08905 overlap by 1 nucleotides
AO356_08905 and AO356_08910 overlap by 17 nucleotides
AO356_08910 and AO356_08915 are separated by 616 nucleotides
AO356_08895: AO356_08895 - GlcNAc-PI de-N-acetylase, at 2,004,876 to 2,006,276
_08895
AO356_08900: AO356_08900 - acetyltransferase, at 2,006,285 to 2,007,181
_08900
AO356_08905: AO356_08905 - glycosyl transferase, at 2,007,181 to 2,008,311
_08905
AO356_08910: AO356_08910 - carbamoyltransferase, at 2,008,295 to 2,010,052
_08910
AO356_08915: AO356_08915 - hypothetical protein, at 2,010,669 to 2,011,055
_08915
Group
Condition
AO356
_08895
AO356
_08900
AO356
_08905
AO356
_08910
AO356
_08915
temperature
LB 20C
-3.9
N.D.
-4.5
-2.1
+0.2
temperature
LB 10C
-4.0
N.D.
-3.7
-2.4
-0.0
motility
outer cut, LB soft agar motility assay
-2.0
N.D.
-4.5
-3.4
-0.1
motility
outer cut, LB soft agar motility assay
-2.3
N.D.
-4.7
-2.8
-0.1
motility
outer cut, LB soft agar motility assay
-2.2
N.D.
-4.6
-2.9
-0.2
stress
Benzalkonium Chloride 0.016 mg/ml
-2.2
N.D.
-0.8
-5.8
-0.7
carbon source
Carnitine Hydrochloride (C)
-3.2
N.D.
-5.5
-0.8
+0.1
survival
4C survival; 192 hrs
-3.3
N.D.
-4.5
-1.7
-0.1
pH
Minimal media pH9
-3.6
N.D.
-4.8
-0.9
-0.2
temperature
LB 30C
-3.8
N.D.
-3.3
-2.2
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-2.7
N.D.
-3.4
-2.7
-0.3
survival
4C survival; 360 hrs
-3.1
N.D.
-4.2
-1.5
-0.2
stress
Aluminum chloride 5 mM
-2.8
N.D.
-2.5
-3.4
-0.2
nitrogen source
Putrescine (N)
-3.4
N.D.
-5.7
+0.2
+0.1
stress
perchlorate 75 mM
-2.7
N.D.
-4.2
-1.8
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-3.4
N.D.
-4.6
-0.6
+0.0
pH
Minimal media pH6
-4.0
N.D.
-5.2
+0.6
+0.1
nitrogen source
L-tyrosine (N)
-2.9
N.D.
-5.2
-0.2
-0.1
temperature
LB 20C
-4.0
N.D.
-2.9
-1.3
+0.0
stress
Spectinomycin 0.0125 mg/ml
-3.2
N.D.
-2.7
-1.9
-0.2
temperature
LB 10C
-3.0
N.D.
-3.1
-1.9
-0.1
stress
Benzethonium chloride 0.025 mM
-2.0
N.D.
-2.2
-3.8
-0.1
lb
LB
-1.9
N.D.
-4.8
-1.3
+0.2
stress
D-Cycloserine 0.1 mg/ml
-2.8
N.D.
-4.2
-0.9
+0.1
nitrogen source
nitrite (N)
-2.8
N.D.
-5.5
+0.7
-0.1
nitrogen source
Inosine (N)
-3.1
N.D.
-5.4
+0.9
+0.0
nitrogen source
L-Phenylalanine (N)
-2.0
N.D.
-5.7
+0.4
-0.0
pH
Minimal media pH6
-2.7
N.D.
-4.6
+0.5
-0.0
nitrogen source
Thymine (N)
-2.0
N.D.
-5.5
+0.9
-0.1
pH
Minimal media pH7
-2.5
N.D.
-4.2
+1.0
+0.1
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