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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_08705 and AO356_08710 are separated by 3 nucleotides
AO356_08710 and AO356_08715 are separated by 166 nucleotides
AO356_08715 and AO356_08720 are separated by 42 nucleotides
AO356_08720 and AO356_08725 are separated by 19 nucleotides
AO356_08705: AO356_08705 - flagellar motor protein MotB, at 1,959,144 to 1,960,190
_08705
AO356_08710: AO356_08710 - flagellar motor stator protein MotA, at 1,960,194 to 1,961,045
_08710
AO356_08715: AO356_08715 - histidine kinase, at 1,961,212 to 1,962,750
_08715
AO356_08720: AO356_08720 - thiosulfate sulfurtransferase, at 1,962,793 to 1,963,608
_08720
AO356_08725: AO356_08725 - phosphatidylserine decarboxylase, at 1,963,628 to 1,964,488
_08725
Group
Condition
AO356
_08705
AO356
_08710
AO356
_08715
AO356
_08720
AO356
_08725
survival
4C survival; 1152 hrs
-0.9
-0.9
-0.5
+0.2
N.D.
stress
acetate 40 mM
-1.2
-1.0
+0.1
-0.0
N.D.
stress
Cholin acetate 40 mM
-0.8
-0.9
+0.1
-0.1
N.D.
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.7
-0.8
+0.1
-0.2
N.D.
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.7
-0.8
-0.0
-0.1
N.D.
survival
4C survival; 672 hrs
-0.6
-0.6
-0.3
+0.1
N.D.
stress
copper (II) chloride 2.5 mM
+0.5
+0.5
-0.0
-1.1
N.D.
anaerobic
Nitrate reduction with yeast extract
+0.7
+0.7
+0.1
-0.5
N.D.
stress
methylglyoxal 0.016 vol%
+0.5
+0.5
-0.2
+0.5
N.D.
carbon source
D-Gluconic Acid (C)
+0.8
+0.6
-0.2
+0.1
N.D.
stress
Lomefloxacin 0.0005 mM
+0.8
+0.6
+0.1
-0.1
N.D.
carbon source
D-Fructose (C)
+0.7
+0.7
-0.0
+0.1
N.D.
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.8
+0.7
-0.1
+0.2
N.D.
stress
Spectinomycin 0.025 mg/ml
+0.8
+0.8
-0.0
+0.2
N.D.
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.9
+0.9
-0.2
+0.3
N.D.
carbon source
D-Gluconic Acid (C)
+0.9
+1.0
+0.0
+0.1
N.D.
stress
Nickel (II) chloride 0.625 mM
+0.8
+0.8
-0.0
+0.6
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
+1.3
+1.1
-0.1
-0.1
N.D.
carbon source
D-Galactose (C)
+1.1
+1.1
-0.1
+0.0
N.D.
carbon source
acetate (C)
+1.0
+0.9
+0.1
+0.2
N.D.
carbon source
D-Xylose (C)
+1.0
+0.9
-0.2
+0.5
N.D.
carbon source
L-Arabinose (C)
+1.1
+1.0
-0.0
+0.3
N.D.
motility
outer cut, LB soft agar motility assay
+1.0
+1.3
+0.2
+0.2
N.D.
stress
Nickel (II) chloride 0.625 mM
+1.4
+1.3
-0.1
+0.6
N.D.
motility
outer cut, LB soft agar motility assay
+0.9
+2.3
+0.2
-0.0
N.D.
carbon source
D-Xylose (C)
+1.4
+1.4
+0.0
+0.7
N.D.
stress
Cobalt chloride 0.08 mM
+1.6
+1.5
-0.0
+0.5
N.D.
stress
Cobalt chloride 0.08 mM
+1.6
+1.6
+0.1
+0.4
N.D.
motility
outer cut, LB soft agar motility assay
+1.3
+2.1
+0.3
+0.3
N.D.
motility
outer cut, LB soft agar motility assay
+1.6
+2.6
+0.3
-0.2
N.D.
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