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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_08520 and AO356_08525 are separated by 23 nucleotides
AO356_08525 and AO356_08530 are separated by 174 nucleotides
AO356_08530 and AO356_08535 are separated by 341 nucleotides
AO356_08535 and AO356_08540 are separated by 68 nucleotides
AO356_08520: AO356_08520 - nicotinate phosphoribosyltransferase, at 1,916,671 to 1,917,876
_08520
AO356_08525: AO356_08525 - NAD synthetase, at 1,917,900 to 1,918,727
_08525
AO356_08530: AO356_08530 - azurin, at 1,918,902 to 1,919,348
_08530
AO356_08535: AO356_08535 - LOG family protein, at 1,919,690 to 1,920,277
_08535
AO356_08540: AO356_08540 - hypothetical protein, at 1,920,346 to 1,920,534
_08540
Group
Condition
AO356
_08520
AO356
_08525
AO356
_08530
AO356
_08535
AO356
_08540
motility
outer cut, LB soft agar motility assay
+0.0
-1.8
-0.6
-0.2
-0.3
survival
4C survival; 360 hrs
-0.1
-0.9
-0.7
+0.3
-1.0
motility
outer cut, LB soft agar motility assay
+0.0
-0.8
-0.7
-0.1
-0.6
nitrogen source
L-Phenylalanine (N)
+0.0
-2.3
-0.0
-0.2
+0.3
stress
Sisomicin 0.001 mg/ml
-0.3
-1.6
+0.1
+0.0
-0.2
motility
outer cut, LB soft agar motility assay
-0.1
-1.0
-1.0
+0.2
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
-0.9
-0.3
-0.4
-0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.0
-0.9
-0.4
-0.3
-0.2
survival
4C survival; 1152 hrs
-0.1
-1.0
-0.0
+0.0
-0.7
survival
4C survival; 672 hrs
-0.1
-0.8
-0.6
-0.0
-0.3
stress
nitrate 200 mM
-0.3
-0.2
-0.6
-0.0
-0.4
nitrogen source
L-Leucine (N)
-0.1
-1.5
+0.0
+0.0
+0.2
carbon source
L-Histidine (C)
+0.0
-0.6
-0.2
+0.1
-0.6
stress
1-ethyl-3-methylimidazolium acetate 5 mM
-0.0
-0.7
+0.3
-0.3
-0.3
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+0.2
-0.5
-0.5
-0.2
carbon source
D-Lactate (C)
-0.3
-0.5
+0.2
-0.4
+0.2
anaerobic
Nitrate reduction with yeast extract
-0.3
-0.3
-0.1
+0.3
-0.5
stress
syringaldehyde 10 mM
-0.2
-0.3
-0.3
+0.5
-0.4
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.0
-0.7
-0.1
-0.2
+0.4
stress
copper (II) chloride 2.5 mM
+0.4
-0.3
-0.6
-0.3
+0.2
stress
Cisplatin 0.0032 mg/ml
-0.1
-0.9
+0.6
+0.2
-0.1
carbon source
L-Lysine (C)
+0.3
-0.1
-0.7
+0.5
-0.2
stress
Ceftazidime 0.2 mg/ml
-0.3
-0.3
+0.6
-0.2
+0.1
stress
Cholin acetate 40 mM
+0.3
-0.8
-0.1
+0.2
+0.3
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.5
+0.4
-0.4
-0.6
stress
Cobalt chloride 0.08 mM
-0.2
-0.6
+0.4
+0.2
+0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
+0.1
-0.2
-0.3
+0.7
carbon source
Carbon source D-Glucose 10 mM
+0.2
+0.2
-0.5
-0.1
+0.5
stress
Lomefloxacin 0.0005 mM
-0.0
+0.5
+0.3
+0.3
+0.3
nitrogen source
D-Serine (N)
+0.3
+0.2
+0.3
+0.5
+0.4
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