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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_08315 and AO356_08320 are separated by 46 nucleotides
AO356_08320 and AO356_08325 are separated by 57 nucleotides
AO356_08325 and AO356_08330 are separated by 82 nucleotides
AO356_08330 and AO356_08335 are separated by 191 nucleotides
AO356_08315: AO356_08315 - hypothetical protein, at 1,869,684 to 1,870,082
_08315
AO356_08320: AO356_08320 - copper resistance protein CopZ, at 1,870,129 to 1,870,608
_08320
AO356_08325: AO356_08325 - predicted copper homeostasis protein
(from data)
, at 1,870,666 to 1,871,070
_08325
AO356_08330: AO356_08330 - TonB-dependent receptor, at 1,871,153 to 1,873,279
_08330
AO356_08335: AO356_08335 - peptidase, at 1,873,471 to 1,874,850
_08335
Group
Condition
AO356
_08315
AO356
_08320
AO356
_08325
AO356
_08330
AO356
_08335
survival
4C survival; 1152 hrs
-1.9
-3.1
-2.5
-1.1
-0.1
temperature
LB 30C
-0.3
-1.9
-1.6
-0.9
-0.1
survival
4C survival; 24 hrs
+0.4
-2.5
-1.5
-1.0
+0.0
temperature
LB 30C
-0.6
-1.6
-1.3
-0.9
-0.0
temperature
LB 20C
+0.1
-1.7
-1.1
-0.8
-0.1
survival
4C survival; 360 hrs
+0.3
-2.1
-0.9
-0.5
+0.0
survival
4C survival; 672 hrs
-0.2
-1.5
-0.4
-0.9
+0.0
survival
4C survival; 192 hrs
+0.2
-2.2
-0.4
-0.3
-0.0
stress
Chlorite 0.04 mM
-0.0
-1.4
-1.3
-0.4
+0.6
temperature
LB 20C
+0.4
-0.8
-1.0
-0.9
-0.0
motility
outer cut, LB soft agar motility assay
-0.7
-0.6
-0.7
-0.4
+0.1
stress
Chlorite 0.08 mM
+0.5
-2.4
-0.3
-0.4
+0.5
stress
Cholin acetate 40 mM
+0.4
-0.8
-1.1
-0.7
+0.1
stress
Cephalothin 2 mg/ml
-0.6
+0.2
-1.0
-0.4
-0.1
temperature
LB 10C
+0.3
-1.3
-0.7
-0.1
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.4
+0.5
-1.4
-0.0
+0.4
stress
nitrite 10 mM
+0.7
-0.7
-0.8
-1.0
+0.3
motility
outer cut, LB soft agar motility assay
+0.2
-0.6
-0.8
-0.3
+0.3
stress
nitrate 200 mM
+0.9
-0.8
-1.3
+0.1
+0.3
anaerobic
Nitrate reduction with yeast extract
-1.7
-0.2
+0.9
+0.4
+0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.1
+1.8
+0.1
-0.2
-0.2
stress
Choline chloride 500 mM
-0.5
+2.1
-0.1
+0.1
+0.0
stress
Nickel (II) chloride 0.625 mM
-0.5
+1.3
+0.6
+0.6
-0.0
stress
perchlorate 75 mM
+0.1
+0.6
+0.8
+0.7
-0.1
stress
Cisplatin 0.0032 mg/ml
-0.1
+0.4
+1.4
+0.6
-0.1
carbon source
acetate (C)
-0.3
+1.3
+1.4
+0.9
-0.0
carbon source
acetate (C)
+0.3
+1.2
+1.7
+1.1
+0.0
stress
Cobalt chloride 0.08 mM
+0.0
+1.7
+1.7
+1.3
-0.1
stress
Cobalt chloride 0.08 mM
-0.3
+2.1
+2.0
+1.3
-0.2
stress
Sisomicin 0.001 mg/ml
-1.0
+2.7
+1.8
+1.6
+0.1
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AO356_08325
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