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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_08090 and AO356_08095 are separated by 101 nucleotides
AO356_08095 and AO356_08100 overlap by 4 nucleotides
AO356_08100 and AO356_08105 are separated by 268 nucleotides
AO356_08105 and AO356_08110 are separated by 2 nucleotides
AO356_08090: AO356_08090 - acetyl-CoA acetyltransferase, at 1,812,032 to 1,813,309
_08090
AO356_08095: AO356_08095 - transposase, at 1,813,411 to 1,814,247
_08095
AO356_08100: AO356_08100 - transposase, at 1,814,244 to 1,814,546
_08100
AO356_08105: AO356_08105 - 3-ketoacyl-ACP reductase, at 1,814,815 to 1,816,167
_08105
AO356_08110: AO356_08110 - acyl dehydratase, at 1,816,170 to 1,817,024
_08110
Group
Condition
AO356
_08090
AO356
_08095
AO356
_08100
AO356
_08105
AO356
_08110
stress
Nickel (II) chloride 0.625 mM
+0.2
N.D.
N.D.
+0.1
-1.0
stress
nitrate 200 mM
+0.2
N.D.
N.D.
-0.2
-0.7
carbon source
L-Arginine (C)
+0.0
N.D.
N.D.
-0.0
-0.7
carbon source
Carbon source D-Mannitol 5 mM
-0.0
N.D.
N.D.
+0.1
-0.7
carbon source
L-Arabinose (C)
+0.3
N.D.
N.D.
-0.1
-0.7
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
N.D.
N.D.
-0.2
-0.5
carbon source
Tween 20 (C)
+0.2
N.D.
N.D.
-0.0
-0.6
stress
Cobalt chloride 0.08 mM
-0.2
N.D.
N.D.
+0.3
-0.4
carbon source
D-Sorbitol (C)
-0.1
N.D.
N.D.
+0.2
-0.4
stress
acetate 40 mM
+0.2
N.D.
N.D.
+0.3
-0.6
carbon source
a-Ketoglutaric (C)
+0.2
N.D.
N.D.
+0.1
-0.4
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.6
N.D.
N.D.
-0.3
-0.3
nitrogen source
D-Alanine (N)
+0.0
N.D.
N.D.
-0.3
+0.3
carbon source
pyruvate (C)
+0.2
N.D.
N.D.
+0.2
-0.4
stress
Rifampicin 0.0024 mg/ml
-0.1
N.D.
N.D.
-0.3
+0.4
stress
Spectinomycin 0.025 mg/ml
+0.3
N.D.
N.D.
-0.3
+0.3
stress
Lomefloxacin 0.0005 mM
+0.8
N.D.
N.D.
-0.7
+0.3
stress
Choline chloride 300 mM
+0.6
N.D.
N.D.
-0.2
+0.1
stress
Chlorite 0.08 mM
+0.3
N.D.
N.D.
-0.4
+0.5
stress
Spectinomycin 0.0125 mg/ml
+0.3
N.D.
N.D.
-0.2
+0.3
stress
Bacitracin 2 mg/ml
+0.2
N.D.
N.D.
-0.1
+0.4
lb
LB
-0.1
N.D.
N.D.
+0.1
+0.5
stress
Choline chloride 500 mM
+0.8
N.D.
N.D.
-0.4
+0.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.1
N.D.
N.D.
+0.0
+0.5
stress
syringaldehyde 10 mM
+0.1
N.D.
N.D.
+0.2
+0.4
stress
Ceftazidime 0.2 mg/ml
+0.0
N.D.
N.D.
+0.1
+0.6
stress
syringaldehyde 5 mM
+0.0
N.D.
N.D.
+0.3
+0.5
stress
copper (II) chloride 2.5 mM
-0.2
N.D.
N.D.
+0.3
+0.8
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
N.D.
N.D.
+0.6
+0.0
stress
KB-half, Pseudo5 supernatant
+0.2
N.D.
N.D.
+1.0
+0.3
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