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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_07760 and AO356_07765 overlap by 4 nucleotides
AO356_07765 and AO356_07770 overlap by 4 nucleotides
AO356_07770 and AO356_07775 are separated by 67 nucleotides
AO356_07775 and AO356_07780 are separated by 123 nucleotides
AO356_07760: AO356_07760 - toxin, at 1,726,111 to 1,730,679
_07760
AO356_07765: AO356_07765 - toxin, at 1,730,676 to 1,735,163
_07765
AO356_07770: AO356_07770 - toxin, at 1,735,160 to 1,737,958
_07770
AO356_07775: AO356_07775 - glyoxalase, at 1,738,026 to 1,738,394
_07775
AO356_07780: AO356_07780 - D-aminoacylase, at 1,738,518 to 1,739,990
_07780
Group
Condition
AO356
_07760
AO356
_07765
AO356
_07770
AO356
_07775
AO356
_07780
nitrogen source
Uridine (N)
-0.0
-0.1
-0.0
-0.6
+0.0
temperature
LB 30C
-0.0
+0.0
+0.0
-0.5
-0.1
stress
sodium fluoride 6.25 mM
+0.1
-0.1
+0.1
-0.4
-0.1
stress
Chloramphenicol 0.005 mg/ml
+0.1
-0.0
+0.0
-0.3
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
+0.4
+0.2
-0.9
-0.2
carbon source
D-Xylose (C)
+0.0
-0.1
+0.1
-0.5
-0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.0
-0.0
-0.1
-0.3
+0.2
survival
4C survival; 672 hrs
+0.0
+0.2
-0.0
-0.3
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
+0.1
+0.1
-0.6
+0.1
stress
Cisplatin 0.0032 mg/ml
+0.0
-0.0
+0.1
-0.5
+0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
+0.1
-0.1
-0.1
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.0
-0.0
+0.1
+0.2
-0.4
carbon source
Fumarate (C)
+0.0
-0.1
+0.1
-0.6
+0.4
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.1
-0.1
-0.1
-0.2
+0.2
carbon source
L-Proline (C)
+0.1
-0.1
+0.1
-0.4
+0.2
stress
Cobalt chloride 0.08 mM
+0.0
+0.0
-0.0
-0.4
+0.3
motility
outer cut, LB soft agar motility assay
+0.1
+0.1
+0.1
-0.0
-0.4
carbon source
acetate (C)
-0.0
+0.1
+0.2
-0.3
+0.1
carbon source
Cytidine (C)
-0.0
-0.0
+0.1
+0.3
-0.2
carbon source
D-Glucose (C)
+0.1
+0.1
+0.1
-0.4
+0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.0
+0.1
+0.2
-0.3
+0.2
stress
KB-half, Pseudo5 supernatant
-0.2
-0.1
+0.1
+0.6
+0.0
stress
Sisomicin 0.001 mg/ml
+0.1
+0.1
-0.1
+0.5
-0.2
stress
Vanillin 1.25 mM
+0.1
+0.1
-0.0
+0.5
-0.1
carbon source
Carnitine Hydrochloride (C)
-0.0
+0.0
-0.0
+0.3
+0.4
stress
Cephalothin 2 mg/ml
+0.1
+0.0
+0.1
+0.5
-0.0
stress
Ceftazidime 0.2 mg/ml
-0.0
+0.1
+0.1
+0.3
+0.3
stress
Nickel (II) chloride 0.625 mM
+0.0
+0.1
+0.1
+0.5
+0.1
stress
Cholin acetate 20 mM
+0.1
+0.1
+0.2
+0.6
+0.0
anaerobic
Nitrate reduction with yeast extract
-0.1
+0.3
-0.0
+0.7
+0.1
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