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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_07710 and AO356_07715 overlap by 4 nucleotides
AO356_07715 and AO356_07720 overlap by 4 nucleotides
AO356_07720 and AO356_07725 are separated by 28 nucleotides
AO356_07725 and AO356_07730 are separated by 21 nucleotides
AO356_07710: AO356_07710 - nickel ABC transporter permease, at 1,712,778 to 1,713,635
_07710
AO356_07715: AO356_07715 - methionine ABC transporter ATP-binding protein, at 1,713,632 to 1,714,618
_07715
AO356_07720: AO356_07720 - ABC transporter ATP-binding protein, at 1,714,615 to 1,715,586
_07720
AO356_07725: AO356_07725 - diguanylate cyclase, at 1,715,615 to 1,717,129
_07725
AO356_07730: AO356_07730 - hypothetical protein, at 1,717,151 to 1,717,741
_07730
Group
Condition
AO356
_07710
AO356
_07715
AO356
_07720
AO356
_07725
AO356
_07730
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.0
-0.2
+0.0
-0.3
-1.3
motility
outer cut, LB soft agar motility assay
-0.2
+0.1
-0.5
-0.0
-1.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.5
-0.5
+0.0
-0.0
-0.6
nitrogen source
D-Alanine (N)
-0.0
-0.1
-0.0
+0.1
-1.1
nitrogen source
nitrite (N)
-0.1
-0.1
-0.1
+0.0
-0.7
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.2
-0.0
-0.0
+0.1
-0.9
lb
LB
-0.0
+0.1
-0.3
-0.0
-0.7
stress
Chlorite 0.08 mM
-0.5
+0.4
-0.1
-0.2
-0.6
nitrogen source
L-Phenylalanine (N)
-0.1
-0.4
-0.2
-0.1
+0.4
carbon source
Tween 20 (C)
+0.3
-0.1
-0.0
+0.1
-0.9
stress
methylglyoxal 0.016 vol%
-0.7
-0.0
-0.3
+0.0
+0.5
carbon source
L-Lysine (C)
-0.2
-0.3
+0.3
+0.1
-0.4
stress
Nalidixic 0.004 mg/ml
+0.3
-0.1
+0.1
-0.0
-0.6
carbon source
Carbon source D-Mannitol 2.5 mM
-0.3
-0.2
-0.3
+0.0
+0.4
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.0
-0.2
-0.5
-0.2
+0.8
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.2
-0.3
-0.1
-0.2
+0.5
survival
4C survival; 1152 hrs
+0.2
-0.3
+0.0
-0.2
+0.5
survival
4C survival; 192 hrs
-0.3
+0.1
-0.2
+0.0
+0.6
stress
Tetracycline 0.0001 mg/ml
-0.2
-0.5
+0.2
+0.0
+0.8
carbon source
L-Malic (C)
+0.0
-0.5
+0.1
+0.1
+0.6
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.3
-0.2
+0.0
+0.5
carbon source
Glycerol (C)
+0.1
-0.3
+0.2
-0.0
+0.5
carbon source
Carbon source Sucrose 5 mM
+0.1
-0.2
+0.1
-0.1
+0.6
stress
KB-half, Pseudo5 supernatant
-0.1
-0.1
-0.2
-0.0
+1.0
carbon source
L-Arabinose (C)
+0.1
-0.0
-0.2
+0.0
+1.0
carbon source
D-Ribose (C)
+0.3
+0.3
-0.1
+0.0
+0.4
carbon source
acetate (C)
+0.2
+0.2
+0.1
+0.1
+0.7
motility
outer cut, LB soft agar motility assay
+0.5
+0.1
+0.1
+0.1
+0.5
anaerobic
Nitrate reduction with yeast extract
+0.3
+0.1
+0.0
+0.0
+1.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.1
+0.2
+0.1
+0.2
+1.5
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