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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_07610 and AO356_07615 are separated by 318 nucleotides
AO356_07615 and AO356_07620 are separated by 22 nucleotides
AO356_07620 and AO356_07625 are separated by 209 nucleotides
AO356_07625 and AO356_07630 overlap by 14 nucleotides
AO356_07610: AO356_07610 - LysR family transcriptional regulator, at 1,684,926 to 1,685,843
_07610
AO356_07615: AO356_07615 - AraC family transcriptional regulator, at 1,686,162 to 1,687,100
_07615
AO356_07620: AO356_07620 - short-chain dehydrogenase, at 1,687,123 to 1,687,956
_07620
AO356_07625: AO356_07625 - RNA polymerase subunit sigma, at 1,688,166 to 1,688,681
_07625
AO356_07630: AO356_07630 - siderophore-interacting protein, at 1,688,668 to 1,689,651
_07630
Group
Condition
AO356
_07610
AO356
_07615
AO356
_07620
AO356
_07625
AO356
_07630
motility
outer cut, LB soft agar motility assay
+0.0
+0.1
-1.1
+0.4
-0.4
stress
nitrite 10 mM
-0.3
+0.0
-0.2
-0.5
-0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.2
-0.1
-0.3
-0.4
-0.0
stress
Rifampicin 0.0024 mg/ml
-0.1
+0.3
-0.1
-0.2
-0.4
nitrogen source
nitrite (N)
+0.1
+0.1
-0.2
-0.4
-0.0
carbon source
Carbon source Sucrose 2.5 mM
-0.1
+0.1
-0.5
+0.2
-0.1
anaerobic
Nitrate reduction with yeast extract
+0.0
+0.1
+0.2
-0.3
-0.3
carbon source
m-Inositol (C)
-0.2
+0.1
+0.1
-0.4
+0.1
carbon source
Carbon source D-Mannitol 5 mM
-0.1
+0.2
-0.1
+0.2
-0.3
nitrogen source
D-Serine (N)
+0.2
+0.0
-0.4
+0.2
-0.1
stress
Cephalothin 2 mg/ml
+0.2
-0.2
-0.4
+0.2
+0.0
motility
outer cut, LB soft agar motility assay
+0.3
-0.0
-0.6
+0.4
-0.1
carbon source
Cytidine (C)
+0.2
+0.2
-0.2
-0.2
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.1
-0.1
+0.3
-0.2
-0.1
carbon source
D-Lactate (C)
-0.1
+0.1
-0.3
+0.3
-0.1
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.1
+0.1
-0.4
+0.3
-0.1
carbon source
Fumarate (C)
+0.3
-0.1
-0.2
+0.3
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
+0.1
-0.2
+0.5
+0.0
carbon source
Carbon source Sucrose 10 mM
-0.1
+0.2
-0.4
+0.6
-0.1
stress
methylglyoxal 0.016 vol%
-0.0
+0.0
-0.3
+0.5
+0.1
stress
Nickel (II) chloride 0.625 mM
+0.1
+0.1
-0.3
+0.5
-0.1
stress
syringaldehyde 5 mM
+0.1
-0.0
-0.3
+0.5
+0.1
motility
outer cut, LB soft agar motility assay
+0.5
-0.1
+0.2
-0.4
+0.2
stress
Cobalt chloride 0.08 mM
-0.1
+0.1
-0.0
+0.5
-0.2
carbon source
Carbon source Sucrose 2.5 mM
-0.2
+0.1
+0.1
+0.5
-0.1
motility
outer cut, LB soft agar motility assay
-0.0
+0.1
-0.1
+0.6
-0.1
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.3
+0.1
-0.4
+0.5
+0.0
carbon source
Carbon source D-Glucose 10 mM
+0.1
+0.2
-0.1
+0.8
-0.2
carbon source
Carbon source D-Mannitol 2.5 mM
+0.0
+0.2
-0.0
+0.8
-0.1
stress
copper (II) chloride 2.5 mM
+0.1
-0.1
-0.0
+0.8
+0.3
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