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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_07140 and AO356_07145 are separated by 10 nucleotides
AO356_07145 and AO356_07150 are separated by 176 nucleotides
AO356_07150 and AO356_07155 are separated by 49 nucleotides
AO356_07155 and AO356_07160 overlap by 4 nucleotides
AO356_07140: AO356_07140 - glutamyl-tRNA amidotransferase, at 1,574,037 to 1,575,488
_07140
AO356_07145: AO356_07145 - glutamyl-tRNA amidotransferase, at 1,575,499 to 1,576,944
_07145
AO356_07150: AO356_07150 - hypothetical protein, at 1,577,121 to 1,577,498
_07150
AO356_07155: AO356_07155 - conjugal transfer protein TraR, at 1,577,548 to 1,578,609
_07155
AO356_07160: AO356_07160 - 4-carboxymuconolactone decarboxylase, at 1,578,606 to 1,578,986
_07160
Group
Condition
AO356
_07140
AO356
_07145
AO356
_07150
AO356
_07155
AO356
_07160
stress
Chlorite 0.08 mM
N.D.
N.D.
-0.3
-0.1
-1.7
phage
P5ss-5 phage 10-1 dilution SM calcl2
N.D.
N.D.
+0.2
-0.2
-1.8
survival
4C survival; 192 hrs
N.D.
N.D.
+0.2
-0.5
-1.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
N.D.
N.D.
-0.2
-0.0
-1.0
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
+0.1
-0.2
-1.2
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
-0.1
-1.2
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
N.D.
N.D.
-0.2
-0.7
-0.2
carbon source
L-Histidine (C)
N.D.
N.D.
-0.2
-0.2
-0.7
stress
Tetracycline 0.0001 mg/ml
N.D.
N.D.
-0.0
-0.4
-0.6
survival
4C survival; 360 hrs
N.D.
N.D.
+0.3
-0.5
-0.8
carbon source
Glycerol (C)
N.D.
N.D.
-0.2
+0.0
-0.7
carbon source
Carbon source D-Mannitol 2.5 mM
N.D.
N.D.
-0.2
-0.1
-0.6
carbon source
L-Lysine (C)
N.D.
N.D.
+0.1
-0.2
-0.8
resistance
20 mM putrescine
N.D.
N.D.
-0.0
-0.2
-0.6
stress
nitrate 200 mM
N.D.
N.D.
+0.1
-0.4
-0.5
carbon source
Carbon source Sucrose 10 mM
N.D.
N.D.
+0.0
+0.1
-0.9
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
N.D.
N.D.
+0.1
-0.5
-0.2
stress
acetate 40 mM
N.D.
N.D.
-0.2
+0.1
-0.6
stress
copper (II) chloride 2.5 mM
N.D.
N.D.
-0.2
+0.1
-0.5
stress
Cholin acetate 20 mM
N.D.
N.D.
-0.4
-0.3
+0.3
carbon source
L-Histidine (C)
N.D.
N.D.
+0.2
+0.3
-0.4
stress
Bacitracin 2 mg/ml
N.D.
N.D.
-0.2
-0.5
+0.8
carbon source
D-Galactose (C)
N.D.
N.D.
-0.3
+0.3
+0.3
stress
methylglyoxal 0.016 vol%
N.D.
N.D.
+0.1
-0.4
+0.6
lb
LB
N.D.
N.D.
-0.2
+0.2
+0.5
temperature
LB 20C
N.D.
N.D.
+0.1
-0.3
+0.8
anaerobic
Nitrate reduction with yeast extract
N.D.
N.D.
-0.1
+0.4
+0.4
pH
Minimal media pH6
N.D.
N.D.
+0.0
-0.2
+1.0
pH
Minimal media pH8
N.D.
N.D.
+0.0
+0.0
+0.8
survival
4C survival; 24 hrs
N.D.
N.D.
+0.3
-0.1
+0.8
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