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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_06825 and AO356_06830 are separated by 182 nucleotides
AO356_06830 and AO356_06835 are separated by 200 nucleotides
AO356_06835 and AO356_06840 are separated by 97 nucleotides
AO356_06840 and AO356_06845 are separated by 122 nucleotides
AO356_06825: AO356_06825 - lactoylglutathione lyase, at 1,507,526 to 1,507,942
_06825
AO356_06830: AO356_06830 - hypothetical protein, at 1,508,125 to 1,509,174
_06830
AO356_06835: AO356_06835 - GntR family transcriptional regulator, at 1,509,375 to 1,510,088
_06835
AO356_06840: AO356_06840 - GntR family transcriptional regulator, at 1,510,186 to 1,510,929
_06840
AO356_06845: AO356_06845 - porin, at 1,511,052 to 1,511,774
_06845
Group
Condition
AO356
_06825
AO356
_06830
AO356
_06835
AO356
_06840
AO356
_06845
stress
Lomefloxacin 0.0005 mM
-0.6
-0.2
+0.2
-0.3
-0.0
stress
Choline chloride 500 mM
-0.3
+0.1
-0.5
-0.3
-0.0
stress
copper (II) chloride 2.5 mM
+0.2
-0.3
-0.8
+0.0
+0.0
anaerobic
Nitrate reduction with yeast extract
+0.3
+0.3
-1.1
+0.1
-0.3
stress
Cephalothin 2 mg/ml
-0.1
+0.0
-0.5
-0.2
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-0.3
-0.2
+0.1
-0.2
stress
Benzalkonium Chloride 0.016 mg/ml
-0.3
+0.3
-0.2
-0.2
-0.0
survival
4C survival; 360 hrs
-0.4
+0.1
-0.5
+0.4
-0.0
temperature
LB 37C
-0.1
+0.3
-0.3
-0.2
-0.0
stress
Sisomicin 0.001 mg/ml
+0.2
-0.2
-0.4
+0.2
+0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.4
+0.1
+0.2
-0.1
+0.0
stress
Rifampicin 0.0016 mg/ml
+0.4
+0.0
-0.4
-0.1
-0.1
stress
Chlorite 0.08 mM
-0.1
-0.2
+0.4
-0.3
+0.1
pH
Minimal media pH7
+0.2
+0.1
-0.5
+0.0
-0.0
stress
Nalidixic 0.004 mg/ml
+0.3
-0.2
+0.2
-0.2
-0.1
stress
Cholin acetate 20 mM
-0.2
+0.2
+0.2
-0.2
+0.1
carbon source
L-Aspartic Acid (C)
-0.1
+0.2
+0.3
-0.1
-0.1
stress
Cisplatin 0.0032 mg/ml
+0.6
-0.1
-0.1
+0.0
-0.2
temperature
LB 20C
+0.3
+0.2
-0.2
+0.0
-0.1
carbon source
Ethanol (C)
+0.3
-0.1
+0.2
-0.1
-0.2
resistance
20 mM putrescine
+0.0
+0.4
+0.3
-0.2
-0.0
stress
D-Cycloserine 0.1 mg/ml
+0.1
+0.1
+0.3
-0.2
+0.2
stress
Chlorite 0.04 mM
+0.7
+0.1
+0.1
-0.4
+0.0
motility
outer cut, LB soft agar motility assay
+0.5
-0.1
+0.2
-0.2
+0.1
pH
Minimal media pH9
+0.3
+0.4
-0.1
+0.1
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.2
+0.2
+0.1
+0.2
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.4
-0.1
+0.7
-0.0
-0.1
carbon source
L-Lactate (C)
+0.6
+0.1
+0.3
-0.1
+0.1
stress
KB-half, Pseudo5 supernatant
+0.4
-0.1
+0.3
+0.2
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
-0.2
+0.2
+0.4
+0.6
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