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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_06470 and AO356_06475 are separated by 123 nucleotides
AO356_06475 and AO356_06480 are separated by 317 nucleotides
AO356_06480 and AO356_06485 are separated by 185 nucleotides
AO356_06485 and AO356_06495 are separated by 1049 nucleotides
AO356_06470: AO356_06470 - hypothetical protein, at 1,432,950 to 1,433,357
_06470
AO356_06475: AO356_06475 - hypothetical protein, at 1,433,481 to 1,435,460
_06475
AO356_06480: AO356_06480 - hypothetical protein, at 1,435,778 to 1,436,335
_06480
AO356_06485: AO356_06485 - hypothetical protein, at 1,436,521 to 1,436,832
_06485
AO356_06495: AO356_06495 - alpha/beta hydrolase, at 1,437,882 to 1,438,727
_06495
Group
Condition
AO356
_06470
AO356
_06475
AO356
_06480
AO356
_06485
AO356
_06495
carbon source
Glycerol (C)
-0.7
+0.1
-0.0
-0.1
-0.1
stress
methylglyoxal 0.016 vol%
-0.5
+0.0
+0.0
-0.2
-0.1
stress
Cholin acetate 40 mM
-0.2
-0.2
-0.0
-0.4
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
+0.1
-0.2
-0.1
-0.1
stress
Chlorite 0.04 mM
-0.3
-0.0
+0.0
-0.4
+0.1
stress
Cisplatin 0.0032 mg/ml
-0.4
+0.1
-0.1
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.4
+0.1
+0.1
-0.5
+0.1
stress
Chloramphenicol 0.005 mg/ml
-0.3
+0.0
-0.1
+0.2
-0.1
stress
Rifampicin 0.0024 mg/ml
-0.5
-0.2
+0.1
+0.2
+0.0
stress
KB-half, Pseudo5 supernatant
-0.2
-0.5
-0.4
+0.2
+0.8
carbon source
L-Lysine (C)
-0.5
-0.1
+0.4
-0.1
+0.2
stress
Rifampicin 0.0016 mg/ml
-0.4
-0.1
+0.1
+0.1
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.0
-0.0
-0.3
-0.7
+0.8
carbon source
D-Glucose (C)
-0.5
+0.1
-0.1
+0.4
+0.0
nitrogen source
D-Alanine (N)
-0.4
+0.0
-0.1
+0.1
+0.2
stress
perchlorate 75 mM
-0.4
+0.0
+0.2
+0.2
-0.1
stress
Sisomicin 0.001 mg/ml
-0.6
+0.1
-0.0
+0.1
+0.4
carbon source
Glycerol (C)
-0.4
-0.0
+0.1
+0.2
+0.2
carbon source
a-Ketoglutaric (C)
-0.0
+0.2
-0.1
+0.4
-0.2
stress
acetate 40 mM
+0.3
-0.2
+0.2
-0.1
+0.1
stress
Paraquat dichloride 0.0625 mg/ml
+0.2
-0.1
-0.1
+0.3
-0.1
carbon source
D-Trehalose (C)
-0.2
-0.1
+0.2
+0.3
+0.1
stress
nitrite 10 mM
+0.2
+0.0
+0.2
-0.4
+0.3
motility
outer cut, LB soft agar motility assay
+0.4
-0.1
-0.1
+0.2
+0.0
carbon source
L-Proline (C)
-0.2
+0.0
+0.2
+0.5
-0.1
carbon source
L-Asparagine (C)
-0.3
+0.0
+0.1
+0.4
+0.1
motility
outer cut, LB soft agar motility assay
+0.7
-0.1
+0.0
-0.0
-0.2
carbon source
D,L-Lactate (C)
+0.2
-0.0
-0.0
+0.4
+0.1
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.2
+0.0
+0.2
+0.4
+0.1
carbon source
Ethanol (C)
+0.2
-0.0
+0.3
+0.6
+0.1
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