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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_06245 and AO356_06250 are separated by 48 nucleotides
AO356_06250 and AO356_06255 overlap by 4 nucleotides
AO356_06255 and AO356_06260 overlap by 4 nucleotides
AO356_06260 and AO356_06265 overlap by 4 nucleotides
AO356_06245: AO356_06245 - diguanylate cyclase, at 1,383,349 to 1,384,350
_06245
AO356_06250: AO356_06250 - chemotaxis protein CheY, at 1,384,399 to 1,385,409
_06250
AO356_06255: AO356_06255 - chemotaxis protein CheA, at 1,385,406 to 1,387,670
_06255
AO356_06260: AO356_06260 - chemotaxis protein CheW, at 1,387,667 to 1,388,335
_06260
AO356_06265: AO356_06265 - chemotaxis protein CheR, at 1,388,332 to 1,389,597
_06265
Group
Condition
AO356
_06245
AO356
_06250
AO356
_06255
AO356
_06260
AO356
_06265
motility
outer cut, LB soft agar motility assay
+0.0
-1.3
+0.1
-0.9
+0.4
nitrogen source
Gly-Glu (N)
+0.0
-0.9
+0.1
-0.2
-0.3
stress
nitrate 200 mM
+0.0
-1.2
-0.0
-0.2
+0.1
survival
4C survival; 360 hrs
-0.1
-1.0
+0.0
+0.1
-0.1
carbon source
Cytidine (C)
+0.2
-1.3
+0.2
+0.0
-0.0
stress
Choline chloride 300 mM
+0.3
-0.7
-0.0
-0.4
-0.0
carbon source
acetate (C)
+0.0
-1.1
+0.1
-0.1
+0.1
survival
4C survival; 192 hrs
-0.1
-0.9
-0.1
-0.1
+0.3
stress
Chlorite 0.04 mM
-0.1
-1.1
+0.1
+0.2
-0.0
stress
Tetracycline 0.0001 mg/ml
+0.0
-1.1
+0.1
+0.2
+0.0
motility
outer cut, LB soft agar motility assay
-0.0
-0.8
-0.2
+0.3
+0.1
stress
perchlorate 75 mM
+0.0
-0.8
-0.2
-0.1
+0.4
survival
4C survival; 672 hrs
+0.0
-1.0
+0.1
+0.2
+0.1
nitrogen source
Urea (N)
+0.1
-0.9
+0.1
+0.0
+0.2
stress
Cephalothin 2 mg/ml
+0.2
-0.8
-0.1
+0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-1.1
+0.2
-0.2
+0.5
carbon source
L-Leucine (C)
+0.3
-0.7
-0.0
+0.2
-0.2
temperature
LB 30C
+0.1
-0.7
-0.2
+0.1
+0.3
stress
Chlorite 0.08 mM
+0.2
-0.9
-0.1
+0.1
+0.4
carbon source
L-Alanine (C)
-0.0
-0.7
+0.1
+0.3
+0.2
carbon source
L-Lysine (C)
+0.1
+0.5
-0.1
+0.0
-0.6
carbon source
L-Lactate (C)
+0.3
-1.1
+0.1
+0.2
+0.4
carbon source
D-Gluconic Acid (C)
+0.1
-0.7
+0.2
+0.1
+0.2
survival
4C survival; 1152 hrs
+0.1
-0.7
+0.4
-0.0
+0.3
stress
Cholin acetate 40 mM
-0.2
+0.9
-0.3
-0.0
-0.2
stress
Sisomicin 0.001 mg/ml
-0.2
+0.8
+0.2
-0.3
+0.0
carbon source
D-Mannose (C)
+0.3
-0.3
+0.2
+0.5
+0.1
anaerobic
Nitrate reduction with yeast extract
+0.2
+1.1
+0.0
-0.1
-0.5
stress
KB-half, Pseudo5 supernatant
+0.1
-0.4
+0.3
+0.5
+0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.2
+1.7
+0.0
+0.2
-0.2
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