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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_06200 and AO356_06205 are separated by 111 nucleotides
AO356_06205 and AO356_06210 are separated by 316 nucleotides
AO356_06210 and AO356_06215 overlap by 4 nucleotides
AO356_06215 and AO356_06220 are separated by 148 nucleotides
AO356_06200: AO356_06200 - hypothetical protein, at 1,374,008 to 1,374,796
_06200
AO356_06205: AO356_06205 - transposase, at 1,374,908 to 1,375,849
_06205
AO356_06210: AO356_06210 - hypothetical protein, at 1,376,166 to 1,376,495
_06210
AO356_06215: AO356_06215 - alpha/beta hydrolase, at 1,376,492 to 1,377,397
_06215
AO356_06220: AO356_06220 - hypothetical protein, at 1,377,546 to 1,378,823
_06220
Group
Condition
AO356
_06200
AO356
_06205
AO356
_06210
AO356
_06215
AO356
_06220
carbon source
Fumarate (C)
+0.2
-0.2
-0.2
-0.5
-0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.0
+0.1
-0.2
-0.4
-0.1
survival
4C survival; 360 hrs
+0.1
-0.1
-0.5
-0.2
-0.1
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.0
+0.2
-0.4
-0.4
+0.1
stress
acetate 40 mM
-0.1
+0.2
-0.3
-0.2
-0.1
survival
4C survival; 1152 hrs
+0.2
-0.1
-0.8
+0.1
+0.1
carbon source
Carbon source D-Mannitol 5 mM
-0.0
-0.1
-0.2
+0.2
-0.3
survival
4C survival; 672 hrs
+0.2
-0.0
-0.4
-0.2
-0.0
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.0
-0.1
-0.4
+0.3
stress
Vanillin 1.25 mM
+0.1
+0.1
-0.2
-0.5
+0.1
stress
methylglyoxal 0.016 vol%
+0.1
+0.1
-0.4
-0.3
+0.3
stress
Choline chloride 500 mM
+0.2
-0.0
-0.3
-0.2
+0.1
survival
4C survival; 192 hrs
+0.2
+0.1
-0.4
-0.2
+0.1
stress
Paraquat dichloride 0.0625 mg/ml
+0.0
-0.1
-0.2
+0.4
-0.2
stress
copper (II) chloride 2.5 mM
+0.3
-0.1
-0.8
+0.2
+0.2
carbon source
acetate (C)
-0.2
-0.1
+0.6
-0.2
-0.1
stress
nitrite 10 mM
+0.2
+0.3
-0.1
-0.2
-0.2
stress
Nickel (II) chloride 0.625 mM
-0.1
-0.3
+0.3
+0.0
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.1
-0.2
+0.3
+0.1
stress
syringaldehyde 5 mM
+0.2
+0.2
-0.3
-0.0
+0.2
stress
KB-half, Pseudo5 supernatant
-0.1
-0.1
+0.1
-0.0
+0.5
carbon source
acetate (C)
-0.1
-0.1
+0.6
-0.1
-0.1
carbon source
Ethanol (C)
+0.2
+0.1
+0.4
-0.1
-0.2
stress
Chlorite 0.04 mM
-0.1
+0.3
-0.1
+0.3
+0.0
stress
Benzalkonium Chloride 0.016 mg/ml
-0.0
-0.2
+0.7
-0.2
+0.1
carbon source
Putrescine (C)
+0.3
+0.2
+0.1
-0.2
+0.3
nitrogen source
Uridine (N)
+0.1
+0.2
-0.1
+0.4
+0.0
motility
outer cut, LB soft agar motility assay
+0.1
-0.1
+0.4
+0.4
-0.2
carbon source
D-Trehalose (C)
+0.3
+0.2
+0.4
+0.1
+0.1
stress
Sisomicin 0.001 mg/ml
+0.3
+0.2
+0.2
+0.3
+0.1
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