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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_06140 and AO356_06145 are separated by 125 nucleotides
AO356_06145 and AO356_06150 are separated by 91 nucleotides
AO356_06150 and AO356_06155 are separated by 1 nucleotides
AO356_06155 and AO356_06160 are separated by 16 nucleotides
AO356_06140: AO356_06140 - TetR family transcriptional regulator, at 1,362,977 to 1,363,612
_06140
AO356_06145: AO356_06145 - SAM-dependent methyltransferase, at 1,363,738 to 1,364,520
_06145
AO356_06150: AO356_06150 - energy transducer TonB, at 1,364,612 to 1,365,232
_06150
AO356_06155: AO356_06155 - extensin, at 1,365,234 to 1,365,932
_06155
AO356_06160: AO356_06160 - 2-methylisocitrate lyase, at 1,365,949 to 1,366,770
_06160
Group
Condition
AO356
_06140
AO356
_06145
AO356
_06150
AO356
_06155
AO356
_06160
carbon source
L-Glutamic (C)
-0.0
-0.5
-1.2
-0.1
-0.3
stress
Nickel (II) chloride 0.625 mM
-0.2
-1.0
+0.1
-0.2
-0.3
nitrogen source
D-Serine (N)
-0.7
+0.2
-0.2
-0.5
-0.0
stress
copper (II) chloride 2.5 mM
-0.3
-0.7
-0.2
+0.2
-0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.6
-0.5
-0.1
+0.3
-0.1
survival
4C survival; 672 hrs
+0.2
-0.3
-1.4
+0.3
+0.2
stress
nitrite 10 mM
-0.6
-0.5
-0.3
+0.3
+0.2
survival
4C survival; 1152 hrs
-0.0
-0.6
-0.7
+0.3
+0.1
carbon source
NAG (C)
+0.1
-0.5
-0.6
+0.1
+0.2
temperature
LB 30C
+0.4
-0.8
-0.1
-0.2
-0.1
carbon source
L-Lysine (C)
-0.4
-0.1
-0.4
+0.4
-0.2
stress
Cisplatin 0.0032 mg/ml
+0.3
-0.9
-0.0
+0.1
-0.2
carbon source
L-Leucine (C)
-0.5
+0.4
+0.1
-0.6
-0.0
stress
Chlorite 0.08 mM
-0.4
-0.2
+0.6
-0.2
-0.3
stress
Doxycycline hyclate 0.0001 mg/ml
-0.3
-0.5
+0.6
-0.1
-0.2
carbon source
Putrescine (C)
-0.2
+0.5
-0.5
-0.3
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
-1.0
+0.4
+0.2
+0.0
anaerobic
Nitrate reduction with yeast extract
+0.6
-2.3
+0.4
+0.7
+0.5
motility
outer cut, LB soft agar motility assay
-0.1
-0.5
+0.7
+0.1
-0.4
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.2
+0.5
-0.7
+0.2
+0.1
stress
Sisomicin 0.001 mg/ml
-0.2
+0.6
+0.5
-0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.1
+0.3
+0.2
+0.5
-0.7
carbon source
Ethanol (C)
-0.3
+0.8
-0.1
+0.2
-0.2
pH
Minimal media pH7
+0.5
-0.3
+0.2
+0.3
+0.0
stress
Ceftazidime 0.2 mg/ml
-0.1
+0.3
-0.0
+0.9
-0.2
carbon source
Ethanol (C)
-0.2
+1.1
+0.2
+0.1
-0.1
pH
Minimal media pH6
+0.6
-0.1
+0.5
+0.2
-0.0
pH
Minimal media pH8
+0.9
+0.3
+0.0
+0.1
-0.1
pH
Minimal media pH8
+0.8
+0.4
+0.2
+0.1
-0.1
stress
Benzalkonium Chloride 0.016 mg/ml
+0.8
+0.2
+0.5
+0.4
+0.1
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