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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_05975 and AO356_05980 are separated by 2 nucleotides
AO356_05980 and AO356_05985 overlap by 4 nucleotides
AO356_05985 and AO356_05990 are separated by 105 nucleotides
AO356_05990 and AO356_05995 are separated by 3 nucleotides
AO356_05975: AO356_05975 - lipid-A-disaccharide synthase, at 1,325,171 to 1,326,301
_05975
AO356_05980: AO356_05980 - UDP-N-acetylglucosamine acyltransferase, at 1,326,304 to 1,327,080
_05980
AO356_05985: AO356_05985 - 3-hydroxyacyl-ACP dehydratase, at 1,327,077 to 1,327,517
_05985
AO356_05990: AO356_05990 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 1,327,623 to 1,328,678
_05990
AO356_05995: AO356_05995 - hypothetical protein, at 1,328,682 to 1,329,185
_05995
Group
Condition
AO356
_05975
AO356
_05980
AO356
_05985
AO356
_05990
AO356
_05995
stress
Bacitracin 2 mg/ml
N.D.
N.D.
N.D.
N.D.
-6.4
stress
methylglyoxal 0.016 vol%
N.D.
N.D.
N.D.
N.D.
-5.7
stress
Nalidixic 0.004 mg/ml
N.D.
N.D.
N.D.
N.D.
-5.2
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
N.D.
-4.9
stress
Lomefloxacin 0.0005 mM
N.D.
N.D.
N.D.
N.D.
-4.8
stress
perchlorate 75 mM
N.D.
N.D.
N.D.
N.D.
-4.4
stress
Aluminum chloride 5 mM
N.D.
N.D.
N.D.
N.D.
-4.1
survival
4C survival; 360 hrs
N.D.
N.D.
N.D.
N.D.
-4.1
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
N.D.
-3.8
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
N.D.
-3.8
carbon source
Inosine (C)
N.D.
N.D.
N.D.
N.D.
-3.7
carbon source
Putrescine (C)
N.D.
N.D.
N.D.
N.D.
-3.6
stress
Cholin acetate 40 mM
N.D.
N.D.
N.D.
N.D.
-3.4
stress
Nickel (II) chloride 0.625 mM
N.D.
N.D.
N.D.
N.D.
-3.4
carbon source
acetate (C)
N.D.
N.D.
N.D.
N.D.
-3.3
temperature
LB 10C
N.D.
N.D.
N.D.
N.D.
-3.2
carbon source
Carbon source Sucrose 5 mM
N.D.
N.D.
N.D.
N.D.
-3.2
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
N.D.
-3.2
carbon source
Carnitine Hydrochloride (C)
N.D.
N.D.
N.D.
N.D.
-3.1
carbon source
L-Isoleucine (C)
N.D.
N.D.
N.D.
N.D.
-3.0
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
N.D.
N.D.
-2.9
stress
Tetracycline 0.0001 mg/ml
N.D.
N.D.
N.D.
N.D.
-2.9
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
N.D.
-2.8
stress
Ceftazidime 0.2 mg/ml
N.D.
N.D.
N.D.
N.D.
-2.8
carbon source
L-Arginine (C)
N.D.
N.D.
N.D.
N.D.
-2.6
carbon source
D-Fructose (C)
N.D.
N.D.
N.D.
N.D.
-2.6
stress
D-Cycloserine 0.1 mg/ml
N.D.
N.D.
N.D.
N.D.
-2.6
carbon source
D-Sorbitol (C)
N.D.
N.D.
N.D.
N.D.
-2.5
stress
1-ethyl-3-methylimidazolium chloride 200 mM
N.D.
N.D.
N.D.
N.D.
+2.5
stress
Choline chloride 500 mM
N.D.
N.D.
N.D.
N.D.
+4.4
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