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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_05745 and AO356_05750 overlap by 14 nucleotides
AO356_05750 and AO356_05755 are separated by 130 nucleotides
AO356_05755 and AO356_05760 overlap by 4 nucleotides
AO356_05760 and AO356_05765 are separated by 67 nucleotides
AO356_05745: AO356_05745 - hydroxyacid dehydrogenase, at 1,278,631 to 1,279,869
_05745
AO356_05750: AO356_05750 - phage tail protein, at 1,279,856 to 1,281,430
_05750
AO356_05755: AO356_05755 - ArsR family transcriptional regulator, at 1,281,561 to 1,281,857
_05755
AO356_05760: AO356_05760 - phage tail protein, at 1,281,854 to 1,282,201
_05760
AO356_05765: AO356_05765 - phage tail protein, at 1,282,269 to 1,283,765
_05765
Group
Condition
AO356
_05745
AO356
_05750
AO356
_05755
AO356
_05760
AO356
_05765
anaerobic
Nitrate reduction with yeast extract
-0.9
-0.8
-3.6
+0.0
+0.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.5
-1.1
+0.2
-1.1
-0.1
stress
perchlorate 75 mM
-0.6
-0.5
+0.1
-1.0
-0.1
carbon source
D-Fructose (C)
-0.2
-0.4
-0.7
-0.7
+0.2
stress
Nickel (II) chloride 0.625 mM
+0.1
-0.7
-1.1
+0.1
+0.0
nitrogen source
Putrescine (N)
-0.3
-0.3
-1.0
-0.0
+0.1
pH
Minimal media pH8
-0.7
+0.2
-0.5
-0.4
+0.0
carbon source
L-Lysine (C)
-0.1
-0.2
-0.4
-1.0
+0.3
carbon source
acetate (C)
+0.1
-0.0
-0.5
-1.2
+0.2
carbon source
D-Fructose (C)
+0.2
+0.0
-0.7
-1.0
+0.1
stress
Cephalothin 2 mg/ml
-0.3
-0.2
+0.5
-1.2
-0.1
stress
methylglyoxal 0.016 vol%
+0.2
-0.9
-0.9
+0.2
+0.1
carbon source
Tween 20 (C)
+0.3
-0.3
+0.2
-1.2
+0.1
stress
Nickel (II) chloride 0.625 mM
+0.6
-0.5
-0.4
-0.5
+0.0
carbon source
acetate (C)
+0.3
-0.4
-0.3
-0.5
+0.2
motility
outer cut, LB soft agar motility assay
-0.1
-1.0
+0.8
-0.2
+0.1
carbon source
D-Glucose (C)
+0.6
+0.1
-1.0
-0.0
+0.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
-0.7
-1.0
+1.0
+0.1
stress
acetate 40 mM
-0.4
+0.4
+0.6
-0.5
-0.2
carbon source
D-Galactose (C)
+0.5
-0.2
-0.5
-0.2
+0.3
carbon source
Carbon source D-Mannitol 2.5 mM
+0.5
-0.2
+0.3
-0.7
+0.1
carbon source
m-Inositol (C)
-0.0
+0.3
+0.5
-0.8
-0.0
carbon source
L-Lactate (C)
+0.4
-0.3
-0.7
+0.4
+0.3
stress
Cobalt chloride 0.08 mM
+0.1
-0.6
-0.4
+0.9
+0.2
carbon source
Glycerol (C)
+0.1
+0.7
+0.4
-0.8
-0.1
carbon source
Carbon source Sucrose 2.5 mM
+0.4
+0.3
+0.3
-0.7
+0.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.7
+0.3
+0.5
+0.2
stress
copper (II) chloride 2.5 mM
-0.3
+0.5
+1.0
+0.1
-0.4
carbon source
Carbon source Sucrose 5 mM
+0.3
+0.5
+0.7
-0.2
+0.3
stress
KB-half, Pseudo5 supernatant
+0.3
+0.3
-0.5
+1.0
+0.6
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