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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_05670 and AO356_05675 are separated by 83 nucleotides
AO356_05675 and AO356_05680 are separated by 71 nucleotides
AO356_05680 and AO356_05685 overlap by 19 nucleotides
AO356_05685 and AO356_05690 are separated by 24 nucleotides
AO356_05670: AO356_05670 - recombinase RecA, at 1,267,182 to 1,268,234
_05670
AO356_05675: AO356_05675 - damage-inducible protein CinA, at 1,268,318 to 1,268,818
_05675
AO356_05680: AO356_05680 - lysozyme, at 1,268,890 to 1,269,426
_05680
AO356_05685: AO356_05685 - lysozyme, at 1,269,408 to 1,269,971
_05685
AO356_05690: AO356_05690 - hypothetical protein, at 1,269,996 to 1,270,427
_05690
Group
Condition
AO356
_05670
AO356
_05675
AO356
_05680
AO356
_05685
AO356
_05690
motility
outer cut, LB soft agar motility assay
-3.1
-0.2
-0.5
+0.1
-0.6
stress
nitrite 10 mM
-3.2
-0.5
-0.1
+0.1
-0.1
motility
outer cut, LB soft agar motility assay
-3.0
-0.3
-0.2
-0.1
-0.2
lb
LB
-3.6
-0.2
-0.1
-0.1
+0.2
stress
Cholin acetate 40 mM
-3.5
-0.2
-0.0
-0.3
+0.3
stress
Spectinomycin 0.0125 mg/ml
-3.2
-0.3
-0.1
+0.0
-0.1
stress
methylglyoxal 0.016 vol%
-3.8
-0.0
+0.1
+0.2
+0.0
stress
D-Cycloserine 0.1 mg/ml
-3.7
-0.1
+0.0
+0.1
+0.1
stress
Rifampicin 0.0016 mg/ml
-2.5
-0.4
-0.5
-0.2
-0.0
stress
Spectinomycin 0.025 mg/ml
-3.2
-0.2
-0.0
+0.0
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
-3.4
-0.1
-0.1
+0.0
+0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-3.2
+0.0
-0.1
+0.2
-0.3
stress
perchlorate 75 mM
-2.9
+0.0
-0.3
-0.2
-0.0
carbon source
L-Lysine (C)
-3.1
+0.0
-0.2
-0.2
+0.1
carbon source
Carnitine Hydrochloride (C)
-2.9
-0.3
-0.0
-0.2
+0.2
lb
LB
-2.8
-0.1
-0.1
-0.1
-0.1
stress
Nalidixic 0.004 mg/ml
-3.5
-0.1
+0.2
-0.0
+0.1
stress
Chlorite 0.04 mM
-2.8
-0.0
-0.1
-0.1
-0.2
stress
Chlorite 0.08 mM
-2.8
+0.2
-0.5
-0.1
+0.1
carbon source
m-Inositol (C)
-3.1
+0.2
-0.0
-0.2
+0.1
stress
Aluminum chloride 5 mM
-3.4
-0.1
+0.4
+0.1
+0.1
carbon source
Carbon source D-Mannitol 2.5 mM
-2.3
-0.3
-0.4
+0.0
+0.2
stress
Cisplatin 0.0032 mg/ml
-3.1
+0.1
+0.3
+0.1
-0.1
stress
acetate 40 mM
-3.0
+0.1
+0.2
+0.0
+0.2
stress
copper (II) chloride 2.5 mM
-2.2
+0.1
-0.8
+0.1
+0.4
carbon source
Carbon source Sucrose 10 mM
-3.1
-0.1
+0.4
+0.2
+0.3
carbon source
Carbon source D-Glucose 10 mM
-2.7
-0.1
+0.1
+0.2
+0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-2.8
+0.1
+0.2
+0.2
-0.0
stress
Lomefloxacin 0.0005 mM
-2.4
-0.3
-0.2
+0.4
+0.7
motility
outer cut, LB soft agar motility assay
-2.6
+0.8
+0.4
+0.5
-0.3
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