Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_05640 and AO356_05645 are separated by 213 nucleotidesAO356_05645 and AO356_05650 are separated by 184 nucleotidesAO356_05650 and AO356_05655 are separated by 0 nucleotidesAO356_05655 and AO356_05660 are separated by 454 nucleotides AO356_05640: AO356_05640 - LuxR family transcriptional regulator, at 1,262,671 to 1,263,324 _05640 AO356_05645: AO356_05645 - hypothetical protein, at 1,263,538 to 1,264,284 _05645 AO356_05650: AO356_05650 - hypothetical protein, at 1,264,469 to 1,264,891 _05650 AO356_05655: AO356_05655 - hypothetical protein, at 1,264,892 to 1,265,086 _05655 AO356_05660: AO356_05660 - cytochrome D ubiquinol oxidase subunit II, at 1,265,541 to 1,266,659 _05660
Group Condition AO356_05640 AO356_05645 AO356_05650 AO356_05655 AO356_05660
carbon source acetate (C) -5.4 +0.7 +0.2 +0.0 -0.2
carbon source acetate (C) -4.3 +0.8 -0.0 +0.2 -0.1
stress Cholin acetate 40 mM -2.8 +0.1 -0.2 -0.4 -0.0
stress 1-ethyl-3-methylimidazolium acetate 20 mM -1.8 +0.0 -0.1 -0.1 +0.1
carbon source D-Lactate (C) -2.0 +0.2 -0.2 -0.0 +0.1
carbon source D-Lactate (C) -1.7 +0.4 +0.1 -0.7 +0.0
stress acetate 40 mM -1.5 -0.0 -0.2 -0.2 +0.0
stress 1-ethyl-3-methylimidazolium acetate 10 mM -1.0 -0.2 -0.1 -0.3 -0.1
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 -0.2 -0.1 +0.1 -1.4 -0.1
stress Chlorite 0.04 mM -0.6 -0.1 -0.6 +0.1 -0.3
stress perchlorate 75 mM -0.4 +0.2 -0.8 -0.3 +0.0
carbon source pyruvate (C) -1.3 +0.1 -0.1 -0.0 +0.1
motility outer cut, LB soft agar motility assay +0.1 -0.3 +0.0 -0.9 +0.1
carbon source Carbon source D-Mannitol 2.5 mM -1.0 +0.2 -0.2 +0.4 -0.1
stress Cobalt chloride 0.08 mM -0.5 +0.1 +0.2 -0.5 +0.1
carbon source Ethanol (C) -0.9 -0.1 +0.2 +0.2 -0.1
stress Nickel (II) chloride 0.625 mM -0.8 +0.3 -0.2 -0.1 +0.1
carbon source Carbon source D-Mannitol 2.5 mM -0.4 +0.1 -0.5 +0.6 -0.3
carbon source Carbon source D-Mannitol 10 mM -0.6 -0.1 -0.2 +0.3 +0.1
stress nitrite 10 mM -0.5 -0.1 -0.1 +0.6 -0.2
stress Ceftazidime 0.2 mg/ml +0.2 +0.2 -0.3 -0.6 +0.1
carbon source Carbon source D,L-Lactate 10 mM -1.0 +0.2 -0.1 +0.6 +0.0
anaerobic Nitrate reduction with yeast extract -1.2 -0.1 +0.5 +0.4 +0.2
carbon source Carbon source D,L-Lactate 10 mM -0.7 +0.2 -0.1 +0.6 -0.1
carbon source L-Lysine (C) -0.7 +0.2 +0.3 +0.4 -0.1
nitrogen source D-Serine (N) +0.3 +0.3 +0.1 -0.6 -0.1
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.2 -0.3 +0.6 -0.2 +0.1
motility outer cut, LB soft agar motility assay +0.4 +0.0 -0.4 +0.6 -0.2
pH Minimal media pH8 -0.6 +0.1 +0.0 +0.6 +0.2
stress copper (II) chloride 2.5 mM -0.4 +0.3 +0.6 +0.4 -0.0
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