Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_05500 and AO356_05505 overlap by 4 nucleotidesAO356_05505 and AO356_05510 are separated by 27 nucleotidesAO356_05510 and AO356_05515 are separated by 13 nucleotidesAO356_05515 and AO356_05520 are separated by 220 nucleotides AO356_05500: AO356_05500 - ABC transporter for L-Lysine, permease component 1 (from data), at 1,232,990 to 1,233,718 _05500 AO356_05505: AO356_05505 - ABC transporter for L-Lysine, permease component 2 (from data), at 1,233,715 to 1,234,425 _05505 AO356_05510: AO356_05510 - succinylglutamate desuccinylase, at 1,234,453 to 1,235,571 _05510 AO356_05515: AO356_05515 - ABC transporter for L-Lysine, ATPase component (from data), at 1,235,585 to 1,236,349 _05515 AO356_05520: AO356_05520 - DNA ligase-associated DEXH box helicase, at 1,236,570 to 1,239,056 _05520
Group Condition AO356_05500 AO356_05505 AO356_05510 AO356_05515 AO356_05520
carbon source L-Lysine (C) -2.5 -2.2 -1.3 -2.1 +0.1
carbon source L-Lysine (C) -2.1 -1.9 -1.3 -2.4 +0.2
carbon source L-Histidine (C) -0.6 -0.7 +0.1 -1.1 +0.1
carbon source L-Histidine (C) -0.4 -0.5 -0.3 -0.8 +0.1
stress Chlorite 0.04 mM -0.2 -0.2 -0.1 -0.7 -0.1
carbon source L-Arginine (C) -0.3 -0.3 -0.2 -0.5 -0.0
carbon source L-Arginine (C) -0.4 -0.3 -0.2 -0.3 +0.0
nitrogen source Gly-Glu (N) -0.3 -0.2 -0.4 -0.3 +0.1
stress Sisomicin 0.001 mg/ml -0.2 -0.4 +0.3 -0.7 -0.1
stress Bacitracin 2 mg/ml -0.0 -0.1 -0.2 -0.4 -0.3
motility outer cut, LB soft agar motility assay +0.2 +0.1 -0.6 -0.7 +0.2
anaerobic Nitrate reduction with yeast extract -0.3 +0.0 -1.0 +0.5 -0.0
stress copper (II) chloride 2.5 mM +0.3 -0.1 -0.9 +0.2 -0.1
stress nitrite 10 mM +0.2 -0.1 +0.4 -0.9 -0.3
nitrogen source Uridine (N) -0.3 -0.0 -0.5 +0.3 -0.0
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 -0.1 -0.0 -0.6 -0.2 +0.7
stress Cholin acetate 20 mM +0.2 -0.1 -0.5 +0.3 -0.1
carbon source L-Malic (C) +0.1 -0.0 -0.5 +0.3 +0.0
survival 4C survival; 360 hrs -0.3 -0.1 +0.5 +0.0 -0.1
stress KB-half, Pseudo5 supernatant -0.1 +0.1 -0.4 +0.3 +0.3
carbon source L-Alanine (C) +0.1 +0.2 +0.1 +0.4 -0.2
nitrogen source L-Isoleucine (N) +0.0 +0.1 +0.4 +0.3 -0.2
nitrogen source L-Leucine (N) -0.1 -0.1 +0.3 +0.3 +0.3
carbon source acetate (C) -0.0 +0.1 +0.2 +0.1 +0.5
carbon source D-Alanine (C) +0.2 +0.1 +0.3 +0.4 -0.1
carbon source Ethanol (C) +0.3 +0.2 +0.6 -0.1 +0.1
motility outer cut, LB soft agar motility assay +0.3 -0.0 +0.6 +0.2 -0.1
carbon source Ethanol (C) +0.2 +0.2 +0.7 +0.0 -0.0
motility outer cut, LB soft agar motility assay -0.0 +0.2 +0.5 +0.2 +0.2
carbon source succinate (C) +0.2 +0.0 +0.3 +0.5 +0.1
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