Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_05475 and AO356_05480 are separated by 207 nucleotidesAO356_05480 and AO356_05485 are separated by 234 nucleotidesAO356_05485 and AO356_05490 overlap by 4 nucleotidesAO356_05490 and AO356_05495 are separated by 325 nucleotides AO356_05475: AO356_05475 - isochorismatase, at 1,225,658 to 1,226,215 _05475 AO356_05480: AO356_05480 - acyl-homoserine lactone acylase subunit beta, at 1,226,423 to 1,228,873 _05480 AO356_05485: AO356_05485 - DNA ligase-associated DEXH box helicase, at 1,229,108 to 1,230,139 _05485 AO356_05490: AO356_05490 - ATP-dependent DNA ligase, at 1,230,136 to 1,231,824 _05490 AO356_05495: AO356_05495 - ABC transporter for L-Lysine, periplasmic substrate-binding component (from data), at 1,232,150 to 1,232,932 _05495
Group Condition AO356_05475 AO356_05480 AO356_05485 AO356_05490 AO356_05495
carbon source L-Lysine (C) -0.3 +0.3 +0.4 +0.4 -3.0
carbon source L-Lysine (C) -0.1 +0.2 +0.3 +0.7 -2.3
nitrogen source L-Phenylalanine (N) -0.8 +0.0 -0.0 -0.0 -0.1
stress Aluminum chloride 5 mM -0.8 -0.2 -0.0 +0.0 +0.1
carbon source Carbon source D-Mannitol 2.5 mM -0.7 -0.0 +0.1 -0.0 -0.1
nitrogen source L-Isoleucine (N) -0.5 +0.0 -0.1 -0.1 +0.1
motility outer cut, LB soft agar motility assay -0.8 -0.1 +0.1 +0.1 +0.1
stress nitrite 10 mM -0.6 +0.1 +0.0 -0.2 +0.1
survival 4C survival; 672 hrs -0.6 +0.0 -0.0 +0.2 -0.2
carbon source D-Alanine (C) -0.6 +0.2 +0.0 -0.1 -0.1
stress Benzalkonium Chloride 0.008 mg/ml -0.4 +0.2 -0.1 -0.1 -0.1
stress Cholin acetate 40 mM -0.5 -0.2 +0.2 -0.0 +0.0
carbon source Ethanol (C) -0.6 -0.0 -0.0 -0.0 +0.2
stress Benzalkonium Chloride 0.016 mg/ml +0.2 -0.3 -0.1 -0.2 -0.1
survival 4C survival; 1152 hrs -0.4 +0.0 -0.2 +0.3 -0.1
carbon source L-Histidine (C) -0.0 +0.2 +0.1 -0.2 -0.5
carbon source L-Histidine (C) +0.0 +0.3 +0.1 -0.3 -0.5
anaerobic Nitrate reduction with yeast extract +0.6 -0.1 -0.1 +0.0 -0.7
phage P5ss-5 phage 10-1 dilution SM calcl2 +0.8 +0.0 -0.3 +0.1 -0.7
carbon source a-Ketoglutaric (C) -0.4 +0.1 +0.0 +0.1 +0.2
survival 4C survival; 360 hrs -0.4 +0.1 +0.2 +0.3 -0.2
carbon source D-Glucose (C) +0.3 +0.2 -0.2 -0.2 -0.0
motility outer cut, LB soft agar motility assay +0.4 -0.2 +0.1 -0.3 +0.4
motility outer cut, LB soft agar motility assay +0.5 -0.2 -0.4 +0.4 +0.3
carbon source D-Ribose (C) +0.4 +0.4 -0.0 -0.3 +0.0
carbon source D-Xylose (C) +0.3 +0.4 -0.1 -0.1 +0.1
stress Vanillin 2.5 mM +0.6 +0.1 -0.1 -0.1 +0.3
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.2 +0.2 +0.2 +0.0 +0.2
carbon source L-Malic (C) +0.4 +0.1 +0.1 +0.2 +0.0
nitrogen source nitrite (N) +0.3 +0.2 +0.1 +0.4 +0.1
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