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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_05410 and AO356_05415 are separated by 23 nucleotides
AO356_05415 and AO356_05420 are separated by 117 nucleotides
AO356_05420 and AO356_05425 are separated by 237 nucleotides
AO356_05425 and AO356_05430 are separated by 99 nucleotides
AO356_05410: AO356_05410 - pyridoxine 5'-phosphate oxidase, at 1,214,755 to 1,215,402
_05410
AO356_05415: AO356_05415 - hypothetical protein, at 1,215,426 to 1,216,562
_05415
AO356_05420: AO356_05420 - serine hydrolase, at 1,216,680 to 1,217,825
_05420
AO356_05425: AO356_05425 - ATP-dependent DNA helicase DinG, at 1,218,063 to 1,220,207
_05425
AO356_05430: AO356_05430 - hypothetical protein, at 1,220,307 to 1,220,771
_05430
Group
Condition
AO356
_05410
AO356
_05415
AO356
_05420
AO356
_05425
AO356
_05430
stress
methylglyoxal 0.016 vol%
N.D.
-1.2
-0.3
-5.3
-0.1
stress
Cisplatin 0.0032 mg/ml
N.D.
-0.4
-0.0
-3.3
-0.1
stress
Lomefloxacin 0.0005 mM
N.D.
-1.3
-0.4
-2.3
+0.4
stress
Cisplatin 0.0032 mg/ml
N.D.
-0.5
+0.1
-3.0
+0.0
stress
1-ethyl-3-methylimidazolium lysine 10 mM
N.D.
-3.0
-0.5
+0.1
+0.2
stress
Cephalothin 2 mg/ml
N.D.
-2.8
-0.4
+0.0
+0.1
stress
Benzalkonium Chloride 0.008 mg/ml
N.D.
-2.9
+0.0
+0.2
-0.2
stress
Bacitracin 2 mg/ml
N.D.
-2.2
-0.4
-0.0
-0.1
stress
Benzalkonium Chloride 0.016 mg/ml
N.D.
-2.5
+0.2
-0.4
+0.2
temperature
LB 20C
N.D.
-1.3
-0.2
-0.3
-0.2
survival
4C survival; 1152 hrs
N.D.
-1.5
-0.2
-0.2
-0.1
stress
Rifampicin 0.0024 mg/ml
N.D.
-2.2
+0.2
+0.2
-0.0
stress
Benzethonium chloride 0.025 mM
N.D.
-1.2
-0.7
+0.0
+0.1
stress
1-ethyl-3-methylimidazolium acetate 20 mM
N.D.
-1.3
-0.0
-0.1
-0.0
stress
Doxycycline hyclate 0.0001 mg/ml
N.D.
-1.6
+0.1
+0.1
+0.0
stress
Spectinomycin 0.0125 mg/ml
N.D.
-1.1
-0.1
+0.0
-0.1
survival
4C survival; 360 hrs
N.D.
-0.6
-0.2
-0.3
-0.2
temperature
LB 20C
N.D.
-0.9
-0.1
-0.1
-0.2
lb
LB
N.D.
-1.1
-0.3
+0.0
+0.0
lb
LB
N.D.
-1.2
+0.2
-0.3
+0.1
stress
Chlorite 0.04 mM
N.D.
-0.9
-0.2
+0.1
-0.2
stress
1-ethyl-3-methylimidazolium acetate 5 mM
N.D.
-1.0
-0.2
-0.1
+0.1
stress
Tetracycline 0.0001 mg/ml
N.D.
-0.9
-0.3
+0.1
-0.0
stress
Rifampicin 0.0016 mg/ml
N.D.
-1.4
+0.2
+0.0
+0.1
stress
acetate 40 mM
N.D.
-1.0
-0.2
+0.1
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
N.D.
+0.7
+0.0
-0.8
-0.5
motility
outer cut, LB soft agar motility assay
N.D.
+0.6
-0.1
-0.7
+0.2
stress
Nalidixic 0.004 mg/ml
N.D.
-0.8
-0.3
+1.2
+0.0
carbon source
L-Histidine (C)
N.D.
+0.7
-0.4
+0.1
+0.1
stress
KB-half, Pseudo5 supernatant
N.D.
+0.8
+0.6
+0.6
+0.0
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