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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_05360 and AO356_05365 are separated by 122 nucleotides
AO356_05365 and AO356_05370 are separated by 104 nucleotides
AO356_05370 and AO356_05375 are separated by 61 nucleotides
AO356_05375 and AO356_05380 are separated by 73 nucleotides
AO356_05360: AO356_05360 - hypothetical protein, at 1,205,522 to 1,206,001
_05360
AO356_05365: AO356_05365 - LysR family transcriptional regulator, at 1,206,124 to 1,207,038
_05365
AO356_05370: AO356_05370 - short-chain dehydrogenase, at 1,207,143 to 1,207,742
_05370
AO356_05375: AO356_05375 - hypothetical protein, at 1,207,804 to 1,208,478
_05375
AO356_05380: AO356_05380 - hypothetical protein, at 1,208,552 to 1,210,165
_05380
Group
Condition
AO356
_05360
AO356
_05365
AO356
_05370
AO356
_05375
AO356
_05380
anaerobic
Nitrate reduction with yeast extract
-0.4
-0.6
-1.9
+0.3
+0.1
stress
perchlorate 75 mM
-0.8
+0.0
+0.1
-0.7
-0.2
stress
Benzalkonium Chloride 0.008 mg/ml
-0.3
+0.1
-0.6
-0.2
-0.1
stress
Spectinomycin 0.0125 mg/ml
-0.5
+0.0
-0.5
-0.1
-0.0
stress
Lomefloxacin 0.0005 mM
-0.6
-0.0
+0.3
-0.7
+0.1
stress
Sisomicin 0.001 mg/ml
-0.3
-0.1
-0.7
+0.3
-0.1
nitrogen source
Gly-Glu (N)
-0.2
+0.2
-0.6
-0.1
-0.1
stress
Cisplatin 0.0032 mg/ml
-0.5
-0.2
-0.1
-0.1
+0.2
survival
4C survival; 672 hrs
-0.5
-0.2
+0.2
+0.1
-0.2
carbon source
D,L-Lactate (C)
-0.3
-0.4
+0.3
-0.1
-0.0
stress
Nalidixic 0.004 mg/ml
-0.2
-0.1
-0.4
+0.4
-0.1
stress
Chloramphenicol 0.005 mg/ml
-0.4
+0.1
+0.3
+0.2
-0.5
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.2
-0.0
-0.5
+0.4
+0.1
stress
Cisplatin 0.0032 mg/ml
-0.1
-0.2
+0.3
-0.3
+0.2
stress
nitrate 200 mM
-0.6
-0.1
+0.6
-0.0
-0.0
stress
Doxycycline hyclate 0.0001 mg/ml
-0.6
+0.0
+0.2
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
-0.4
-0.3
+0.3
nitrogen source
D-Serine (N)
-0.2
+0.2
-0.4
-0.0
+0.5
motility
outer cut, LB soft agar motility assay
-0.6
+0.3
+0.6
-0.3
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
+0.1
-0.6
+0.3
+0.2
carbon source
Carbon source D-Glucose 10 mM
+0.5
-0.2
-0.1
-0.1
+0.2
carbon source
Carbon source D-Mannitol 5 mM
+0.3
-0.2
-0.2
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
+0.2
-0.0
-0.5
+0.4
stress
Bacitracin 2 mg/ml
-0.2
-0.1
+0.3
+0.4
+0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
+0.3
-0.2
+0.4
+0.2
stress
Cholin acetate 40 mM
+0.3
+0.3
+0.1
-0.3
+0.1
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.4
+0.1
+0.4
-0.3
+0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.3
-0.1
+0.2
+0.3
+0.1
carbon source
Carbon source D-Mannitol 10 mM
+0.4
-0.1
+0.3
+0.2
+0.1
carbon source
Carbon source Sucrose 2.5 mM
+0.6
-0.2
+0.2
+0.2
+0.1
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