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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_04640 and AO356_04645 are separated by 1038 nucleotides
AO356_04645 and AO356_04650 are separated by 15 nucleotides
AO356_04650 and AO356_04655 overlap by 4 nucleotides
AO356_04655 and AO356_04660 are separated by 13 nucleotides
AO356_04640: AO356_04640 - enoyl-CoA hydratase, at 1,044,115 to 1,045,227
_04640
AO356_04645: AO356_04645 - lipid kinase, at 1,046,266 to 1,047,333
_04645
AO356_04650: AO356_04650 - lipid kinase, at 1,047,349 to 1,048,164
_04650
AO356_04655: AO356_04655 - lauroyl acyltransferase, at 1,048,161 to 1,048,949
_04655
AO356_04660: AO356_04660 - urea carboxylase, at 1,048,963 to 1,049,688
_04660
Group
Condition
AO356
_04640
AO356
_04645
AO356
_04650
AO356
_04655
AO356
_04660
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.9
-0.2
-0.8
-0.2
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
+0.1
+0.1
-0.5
-0.8
stress
Chlorite 0.08 mM
-0.2
+0.1
-0.8
-0.2
-0.4
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.7
-0.2
-0.3
+0.0
-0.2
stress
perchlorate 75 mM
+0.3
-0.0
-0.6
-0.5
-0.3
carbon source
L-Lysine (C)
+0.0
-0.5
+0.3
-0.5
-0.5
nitrogen source
Gly-Glu (N)
+0.3
-0.0
-0.1
-0.5
-0.4
anaerobic
Nitrate reduction with yeast extract
-0.9
+0.3
+0.0
+0.2
-0.3
carbon source
L-Lysine (C)
+0.0
-0.7
+0.3
-0.5
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.2
+0.3
-0.5
-0.3
+0.1
stress
Sisomicin 0.001 mg/ml
-0.4
+0.2
+0.4
+0.0
-0.3
stress
Paraquat dichloride 0.0625 mg/ml
-0.3
+0.7
+0.2
-0.3
-0.5
stress
Cisplatin 0.0032 mg/ml
+0.3
+0.3
-0.1
-0.2
-0.3
stress
Cobalt chloride 0.08 mM
-0.6
-0.1
+0.5
+0.1
-0.0
survival
4C survival; 192 hrs
-0.3
-0.4
+0.2
+0.4
+0.1
carbon source
Fumarate (C)
-0.5
+0.2
+0.3
+0.1
-0.1
carbon source
Fumarate (C)
-0.2
+0.4
+0.4
-0.3
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.5
-0.1
-0.2
+0.2
carbon source
succinate (C)
-0.2
+0.4
+0.4
-0.2
-0.2
carbon source
D,L-Lactate (C)
-0.2
+0.3
+0.5
-0.2
+0.0
stress
Benzalkonium Chloride 0.016 mg/ml
-0.3
+0.2
-0.1
+0.2
+0.4
stress
KB-half, Pseudo5 supernatant
-0.3
+0.3
-0.4
+0.5
+0.4
carbon source
L-Lactate (C)
-0.2
+0.2
+0.5
+0.2
-0.2
motility
outer cut, LB soft agar motility assay
+0.0
+1.0
+0.0
+0.1
-0.8
motility
outer cut, LB soft agar motility assay
+0.6
-0.1
-0.1
-0.4
+0.5
carbon source
L-Histidine (C)
-0.2
+0.2
+0.7
-0.3
+0.2
carbon source
D-Ribose (C)
-0.2
+0.2
+0.5
+0.2
-0.1
stress
copper (II) chloride 2.5 mM
-0.2
+0.8
+0.1
-0.1
-0.0
carbon source
D-Xylose (C)
+0.2
+0.4
+0.7
+0.0
-0.2
carbon source
D-Ribose (C)
+0.2
+0.4
+0.4
+0.2
+0.1
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