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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_04325 and AO356_04330 overlap by 4 nucleotides
AO356_04330 and AO356_04335 overlap by 4 nucleotides
AO356_04335 and AO356_04340 are separated by 64 nucleotides
AO356_04340 and AO356_04345 are separated by 318 nucleotides
AO356_04325: AO356_04325 - allophanate hydrolase, at 985,215 to 986,135
_04325
AO356_04330: AO356_04330 - allophanate hydrolase, at 986,132 to 986,836
_04330
AO356_04335: AO356_04335 - hypothetical protein, at 986,833 to 987,585
_04335
AO356_04340: AO356_04340 - MFS transporter, at 987,650 to 988,936
_04340
AO356_04345: AO356_04345 - hypothetical protein, at 989,255 to 989,797
_04345
Group
Condition
AO356
_04325
AO356
_04330
AO356
_04335
AO356
_04340
AO356
_04345
carbon source
L-Histidine (C)
-2.2
-3.3
-4.8
-0.3
-0.4
carbon source
L-Histidine (C)
-2.1
-3.9
-4.6
-0.2
+0.0
carbon source
L-Lysine (C)
-1.4
-2.6
-1.6
-0.1
-0.1
pH
Minimal media pH9
-1.8
-2.2
-1.8
+0.1
+0.0
carbon source
D-Lactate (C)
-1.6
-2.0
-2.1
-0.0
+0.2
stress
Sisomicin 0.001 mg/ml
-2.4
-1.2
-1.9
+0.1
+0.4
carbon source
L-Lysine (C)
-1.8
-1.7
-1.5
-0.2
+0.1
survival
4C survival; 1152 hrs
-1.3
-1.4
-1.2
-0.0
-0.7
motility
outer cut, LB soft agar motility assay
-0.0
-0.7
-0.1
+0.0
-3.7
carbon source
D-Lactate (C)
-1.7
-1.3
-1.4
-0.2
+0.3
carbon source
L-Proline (C)
-1.0
-1.2
-1.1
-0.2
-0.3
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.3
+0.2
-0.1
-3.2
carbon source
m-Inositol (C)
-1.4
-1.4
-0.6
-0.0
-0.1
carbon source
L-Arginine (C)
-1.2
-1.3
-1.1
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
-0.5
-0.5
-0.8
-0.2
-1.2
motility
outer cut, LB soft agar motility assay
-0.1
-0.2
-0.2
+0.1
-2.9
carbon source
L-Arginine (C)
-0.9
-1.0
-1.1
-0.0
-0.1
carbon source
L-Proline (C)
-0.9
-1.1
-1.0
-0.1
+0.2
carbon source
m-Inositol (C)
-0.8
-1.2
-0.7
-0.1
-0.1
survival
4C survival; 192 hrs
-0.7
-1.1
-0.9
-0.0
-0.1
nitrogen source
L-tyrosine (N)
-1.0
-0.9
-0.8
+0.1
-0.1
survival
4C survival; 672 hrs
-0.6
-0.9
-0.8
-0.1
-0.4
carbon source
L-Glutamine (C)
-0.6
-0.6
-0.9
-0.3
-0.2
motility
outer cut, LB soft agar motility assay
-0.9
-0.6
-0.4
+0.3
-1.0
survival
4C survival; 360 hrs
-1.0
-1.0
-0.7
+0.2
+0.0
carbon source
D-Fructose (C)
-1.1
-0.9
-0.7
-0.1
+0.3
carbon source
acetate (C)
-1.1
-1.0
-0.5
-0.0
+0.2
carbon source
L-Aspartic Acid (C)
-0.7
-1.0
-0.7
-0.1
+0.2
carbon source
D-Fructose (C)
-0.9
-0.6
-0.7
-0.2
+0.3
stress
Cholin acetate 40 mM
-1.3
+0.2
-0.5
+0.1
-0.7
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