Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_04260 and AO356_04265 are separated by 288 nucleotidesAO356_04265 and AO356_04270 overlap by 7 nucleotidesAO356_04270 and AO356_04275 are separated by 192 nucleotidesAO356_04275 and AO356_04280 are separated by 329 nucleotides AO356_04260: AO356_04260 - porin, at 966,930 to 968,240 _04260 AO356_04265: AO356_04265 - anti-sigma factor, at 968,529 to 968,765 _04265 AO356_04270: AO356_04270 - RNA polymerase subunit sigma-24, at 968,759 to 969,370 _04270 AO356_04275: AO356_04275 - 3-oxoacyl-ACP synthase, at 969,563 to 970,684 _04275 AO356_04280: AO356_04280 - ATP-dependent RNA helicase HrpA, at 971,014 to 974,925 _04280
Group Condition AO356_04260 AO356_04265 AO356_04270 AO356_04275 AO356_04280
stress Fusidic 0.1 mg/ml -0.0 N.D. -0.2 -0.5 -2.4
carbon source Carbon source D-Mannitol 5 mM +0.0 N.D. -0.0 -2.3 -0.1
temperature LB 10C +0.0 N.D. -0.1 -2.0 -0.1
stress Nickel (II) chloride 0.625 mM -0.2 N.D. -0.7 -0.8 -0.4
stress Choline chloride 300 mM -0.0 N.D. -0.4 -2.3 +0.7
motility outer cut, LB soft agar motility assay +0.0 N.D. -0.0 -1.9 -0.2
pH Minimal media pH9 +0.0 N.D. -0.4 -1.5 -0.1
stress sodium fluoride 6.25 mM -0.1 N.D. -0.0 -1.4 -0.0
carbon source Fumarate (C) -0.2 N.D. +0.1 -1.2 -0.2
stress Chloramphenicol 0.005 mg/ml -0.1 N.D. -0.0 -0.3 -1.0
pH Minimal media pH8 -0.1 N.D. -0.2 -1.1 -0.0
stress KB-half, Pseudo5 supernatant +0.1 N.D. -1.1 -1.1 +0.6
motility outer cut, LB soft agar motility assay +0.1 N.D. +0.1 -1.5 -0.0
carbon source Carbon source Sucrose 10 mM -0.1 N.D. -0.2 -1.2 +0.1
stress methylglyoxal 0.016 vol% +0.1 N.D. +0.0 +0.0 -1.3
stress copper (II) chloride 2.5 mM -0.2 N.D. -0.7 -0.5 +0.3
stress 1-ethyl-3-methylimidazolium acetate 20 mM +0.0 N.D. +0.0 -1.3 +0.1
carbon source D-Glucose (C) -0.0 N.D. +0.2 -1.3 -0.0
stress Cobalt chloride 0.08 mM -0.1 N.D. +0.3 +0.1 -1.3
motility outer cut, LB soft agar motility assay +0.2 N.D. +0.8 -1.4 -0.0
stress Lomefloxacin 0.0005 mM -0.0 N.D. +0.0 +0.5 -0.9
nitrogen source D-Serine (N) +0.1 N.D. +0.3 -0.8 +0.3
stress Chlorite 0.08 mM -0.1 N.D. -1.2 +1.0 +0.3
stress 1-ethyl-3-methylimidazolium lysine 10 mM +0.1 N.D. +0.2 -0.8 +0.5
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 -0.1 N.D. -0.6 -0.0 +0.8
stress Choline chloride 500 mM -0.1 N.D. -0.5 +0.1 +1.1
stress Chlorite 0.04 mM -0.1 N.D. -0.5 +0.9 +0.4
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.1 N.D. -0.4 -0.7 +1.8
stress Thallium(I) acetate 0.008 mg/ml -0.1 N.D. -0.5 +1.5 -0.1
stress nitrate 200 mM +0.1 N.D. +0.3 +0.8 +0.3
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