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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_04240 and AO356_04245 are separated by 4 nucleotides
AO356_04245 and AO356_04250 are separated by 84 nucleotides
AO356_04250 and AO356_04255 are separated by 139 nucleotides
AO356_04255 and AO356_04260 are separated by 141 nucleotides
AO356_04240: AO356_04240 - 3-oxoadipate enol-lactonase, at 962,236 to 963,039
_04240
AO356_04245: AO356_04245 - peptidylprolyl isomerase, at 963,044 to 963,607
_04245
AO356_04250: AO356_04250 - multidrug ABC transporter ATP-binding protein, at 963,692 to 965,524
_04250
AO356_04255: AO356_04255 - acyltransferase superfamily protein, at 965,664 to 966,788
_04255
AO356_04260: AO356_04260 - porin, at 966,930 to 968,240
_04260
Group
Condition
AO356
_04240
AO356
_04245
AO356
_04250
AO356
_04255
AO356
_04260
carbon source
Ethanol (C)
-0.0
-1.2
-0.2
+0.2
-0.1
carbon source
Ethanol (C)
-0.1
-1.2
-0.1
+0.3
-0.1
pH
Minimal media pH8
-0.3
-0.4
-0.0
-0.2
+0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.1
-0.2
-0.3
-0.2
-0.0
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
-0.1
-0.3
-0.0
-0.1
stress
nitrite 10 mM
-0.2
-0.2
-0.1
+0.1
-0.2
pH
Minimal media pH6
-0.2
-0.3
-0.1
+0.1
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.2
+0.3
-0.5
-0.2
-0.1
stress
Rifampicin 0.0024 mg/ml
-0.1
-0.6
+0.1
+0.1
-0.1
carbon source
Fumarate (C)
+0.1
-0.3
-0.0
-0.1
-0.2
stress
copper (II) chloride 2.5 mM
-0.2
-0.1
-0.2
+0.1
-0.2
survival
4C survival; 1152 hrs
-0.3
-0.1
+0.0
-0.1
+0.1
stress
KB-half, Pseudo5 supernatant
+0.3
+0.1
-0.6
-0.2
+0.1
stress
Sisomicin 0.001 mg/ml
-0.3
-0.5
+0.0
+0.3
+0.1
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.2
-0.3
+0.0
-0.2
-0.0
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.5
-0.6
+0.0
-0.0
-0.0
carbon source
D-Gluconic Acid (C)
+0.2
+0.1
+0.0
-0.3
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
+0.3
-0.1
+0.0
-0.2
anaerobic
Nitrate reduction with yeast extract
+0.3
-0.2
+0.2
-0.3
+0.1
stress
Chloramphenicol 0.005 mg/ml
-0.2
+0.3
+0.2
-0.0
-0.1
carbon source
D-Galactose (C)
+0.2
+0.3
+0.1
-0.2
+0.0
motility
outer cut, LB soft agar motility assay
+0.1
+0.4
-0.2
-0.0
+0.2
carbon source
D-Gluconic Acid (C)
-0.0
+0.5
+0.0
+0.1
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.3
+0.2
+0.4
-0.0
-0.2
nitrogen source
L-Phenylalanine (N)
+0.0
+0.3
+0.2
+0.2
-0.0
lb
LB
+0.3
+0.3
+0.1
+0.2
-0.0
carbon source
Putrescine (C)
+0.1
+0.0
-0.2
+1.0
-0.0
motility
outer cut, LB soft agar motility assay
+0.6
+0.6
+0.2
-0.1
+0.0
motility
outer cut, LB soft agar motility assay
-0.3
+1.1
+0.2
+0.2
+0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.8
+0.4
+0.3
+0.1
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