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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_04215 and AO356_04220 are separated by 112 nucleotides
AO356_04220 and AO356_04225 are separated by 381 nucleotides
AO356_04225 and AO356_04230 are separated by 150 nucleotides
AO356_04230 and AO356_04235 are separated by 50 nucleotides
AO356_04215: AO356_04215 - mechanosensitive ion channel protein MscS, at 957,524 to 958,822
_04215
AO356_04220: AO356_04220 - hypothetical protein, at 958,935 to 959,801
_04220
AO356_04225: AO356_04225 - FMN-dependent NADH-azoreductase, at 960,183 to 960,782
_04225
AO356_04230: AO356_04230 - 3-phosphoglycerate kinase, at 960,933 to 961,247
_04230
AO356_04235: AO356_04235 - LysR family transcriptional regulator, at 961,298 to 962,221
_04235
Group
Condition
AO356
_04215
AO356
_04220
AO356
_04225
AO356
_04230
AO356
_04235
stress
Chlorite 0.04 mM
-0.1
-0.5
-0.4
-0.5
-0.6
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.2
-0.4
-0.4
-0.8
carbon source
Carbon source D-Mannitol 5 mM
-0.3
-0.0
-0.7
-0.7
+0.1
carbon source
Carbon source D-Mannitol 2.5 mM
-0.1
-0.0
-0.6
-0.5
-0.5
stress
Chlorite 0.08 mM
+0.1
-0.3
-0.1
-1.4
+0.0
stress
Ceftazidime 0.2 mg/ml
-0.7
-0.3
+0.3
-0.5
-0.4
stress
Spectinomycin 0.025 mg/ml
+0.0
-0.2
-0.2
-0.2
-1.1
carbon source
pyruvate (C)
-0.1
-0.3
-0.5
-0.7
+0.1
carbon source
Carbon source D-Mannitol 2.5 mM
-0.0
+0.1
-0.7
-0.7
-0.2
carbon source
Carbon source Sucrose 5 mM
-0.3
+0.1
-0.5
-0.8
+0.1
stress
syringaldehyde 10 mM
+0.1
-0.0
-0.4
-0.6
-0.5
carbon source
L-Histidine (C)
-0.2
-0.1
+0.2
-0.8
-0.6
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
+0.1
-0.6
-0.7
+0.1
carbon source
D-Ribose (C)
-0.1
-0.3
-0.5
-0.7
+0.4
carbon source
Carbon source D-Mannitol 5 mM
-0.1
-0.1
-0.5
-0.8
+0.4
carbon source
Carbon source Sucrose 2.5 mM
-0.3
+0.2
-0.4
-1.0
+0.3
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
-0.2
-0.6
-0.7
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
+0.2
-0.2
-0.8
+0.2
stress
nitrite 10 mM
+0.2
+0.1
+0.4
-0.7
-0.7
stress
Vanillin 2.5 mM
-0.1
+0.1
+0.5
-0.5
-0.5
stress
Cisplatin 0.0032 mg/ml
-0.3
-0.3
-0.1
+0.8
-0.5
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-0.4
+0.2
+0.8
-1.0
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.1
+0.1
+0.1
+0.7
-0.8
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.1
+0.3
+0.6
-0.3
-0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.2
-0.2
+1.3
+0.1
-0.6
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.4
+0.4
+0.4
+0.5
-0.5
carbon source
Ethanol (C)
-0.2
+0.3
+0.6
+0.4
+0.7
anaerobic
Nitrate reduction with yeast extract
-0.2
+0.3
+0.8
+0.8
+0.4
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.2
+0.7
+0.9
+0.5
carbon source
Ethanol (C)
+0.0
+0.3
+0.6
+0.7
+0.7
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