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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_04095 and AO356_04100 are separated by 9 nucleotides
AO356_04100 and AO356_04105 are separated by 52 nucleotides
AO356_04105 and AO356_04110 are separated by 223 nucleotides
AO356_04110 and AO356_04115 are separated by 476 nucleotides
AO356_04095: AO356_04095 - agmatinase, at 921,127 to 922,077
_04095
AO356_04100: AO356_04100 - ketosteroid isomerase, at 922,087 to 922,494
_04100
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
AO356_04110: AO356_04110 - sodium:solute symporter, at 924,279 to 925,667
_04110
AO356_04115: AO356_04115 - LysR family transcriptional regulator, at 926,144 to 927,037
_04115
Group
Condition
AO356
_04095
AO356
_04100
AO356
_04105
AO356
_04110
AO356
_04115
carbon source
L-Arginine (C)
-0.4
-0.6
-0.4
-0.4
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.5
-0.6
+0.0
+0.1
-0.5
carbon source
L-Arginine (C)
-0.8
-0.1
-0.2
-0.4
+0.2
lb
LB
-0.4
-0.4
-0.3
+0.2
-0.3
carbon source
Fumarate (C)
-0.3
-0.5
-0.1
-0.1
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
-0.9
+0.1
-0.1
+0.1
carbon source
D-Lactate (C)
+0.1
-0.6
-0.1
-0.2
+0.2
stress
Lomefloxacin 0.0005 mM
-0.8
+0.2
-0.2
+0.1
+0.2
survival
4C survival; 192 hrs
+0.2
-0.5
-0.2
-0.2
+0.2
nitrogen source
L-Isoleucine (N)
-0.6
+0.2
-0.0
+0.1
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
-0.8
+0.2
-0.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 5 mM
+0.4
-0.5
-0.1
+0.0
-0.2
carbon source
Carbon source D-Mannitol 2.5 mM
+0.3
-0.2
-0.1
+0.1
-0.3
carbon source
L-Arabinose (C)
-0.3
-0.3
+0.2
-0.0
+0.3
carbon source
D,L-Lactate (C)
+0.3
-0.4
+0.1
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.6
+0.2
+0.3
-0.2
nitrogen source
D-Serine (N)
-0.4
+0.7
-0.4
+0.0
+0.0
carbon source
D-Fructose (C)
+0.2
-0.6
+0.3
-0.0
+0.2
stress
Nalidixic 0.004 mg/ml
+0.2
-0.4
+0.0
-0.1
+0.4
nitrogen source
L-Leucine (N)
-0.3
+0.4
+0.0
+0.3
-0.2
pH
Minimal media pH8
+0.4
+0.3
-0.4
-0.0
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
-0.3
+0.4
+0.1
+0.2
+0.1
carbon source
L-Leucine (C)
+0.2
+0.6
-0.0
+0.3
-0.1
stress
Paraquat dichloride 0.0625 mg/ml
+0.1
+0.6
+0.3
-0.1
+0.2
anaerobic
Nitrate reduction with yeast extract
-0.3
+0.3
-0.1
+0.4
+0.9
stress
nitrate 200 mM
-0.3
+0.9
+0.3
+0.1
+0.1
stress
nitrite 10 mM
-0.0
+0.5
+0.4
+0.3
+0.2
stress
Paraquat dichloride 0.0625 mg/ml
+0.1
+1.3
+0.2
-0.1
+0.2
stress
copper (II) chloride 2.5 mM
+0.5
+1.0
+0.2
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.8
+1.1
-0.1
+0.2
+0.4
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