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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_03710 and AO356_03715 are separated by 48 nucleotides
AO356_03715 and AO356_03720 are separated by 30 nucleotides
AO356_03720 and AO356_03725 are separated by 18 nucleotides
AO356_03725 and AO356_03730 are separated by 154 nucleotides
AO356_03710: AO356_03710 - chemotaxis protein CheY, at 824,131 to 825,264
_03710
AO356_03715: AO356_03715 - chemotaxis protein CheA, at 825,313 to 827,565
_03715
AO356_03720: AO356_03720 - protein phosphatase, at 827,596 to 828,381
_03720
AO356_03725: AO356_03725 - histidine kinase, at 828,400 to 828,783
_03725
AO356_03730: AO356_03730 - flagellar biosynthesis sigma factor, at 828,938 to 829,681
_03730
Group
Condition
AO356
_03710
AO356
_03715
AO356
_03720
AO356
_03725
AO356
_03730
motility
outer cut, LB soft agar motility assay
-3.6
-3.0
-1.3
-1.8
-3.3
motility
outer cut, LB soft agar motility assay
-2.5
-2.3
-0.7
-2.9
-2.4
motility
outer cut, LB soft agar motility assay
-2.7
-1.7
-1.0
-2.5
-2.8
motility
outer cut, LB soft agar motility assay
-1.9
-2.0
-1.1
-2.1
-2.7
survival
4C survival; 1152 hrs
-1.8
-2.3
-0.8
-2.5
-2.0
survival
4C survival; 672 hrs
-1.1
-1.2
-0.4
-1.9
-1.5
survival
4C survival; 360 hrs
-0.7
-2.8
-0.2
-0.2
-1.1
carbon source
Glycerol (C)
+0.1
-1.4
+0.2
-2.8
-0.1
survival
4C survival; 192 hrs
-0.8
-1.2
+0.0
-1.1
-0.9
carbon source
Glycerol (C)
+0.1
-1.6
+0.2
-2.5
-0.0
nitrogen source
Inosine (N)
+0.1
-1.7
-0.0
-0.9
+0.2
carbon source
L-Lysine (C)
-0.1
-0.6
+0.1
-1.9
+0.3
nitrogen source
Gly-Glu (N)
-0.5
-1.2
-0.2
-0.8
+0.6
carbon source
L-Arginine (C)
+0.2
-1.4
+0.3
-1.8
+0.8
carbon source
D-Fructose (C)
+0.1
-0.8
+0.1
-1.8
+0.5
carbon source
L-Arginine (C)
-0.0
-1.3
+0.0
-0.9
+0.7
carbon source
D-Ribose (C)
-0.1
-1.2
+0.3
-1.1
+1.0
carbon source
m-Inositol (C)
+0.4
-1.2
+0.3
-1.1
+0.9
nitrogen source
D-Glucosamine Hydrochloride (N)
+1.1
-2.0
+0.8
-1.8
+1.3
carbon source
D-Xylose (C)
+0.4
-2.0
+0.5
-1.1
+1.6
carbon source
D-Xylose (C)
+0.2
-1.3
+0.4
-1.0
+1.6
carbon source
Cytidine (C)
+0.4
-0.6
+0.3
-1.0
+0.9
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.3
-0.5
+0.3
-1.2
+1.2
carbon source
L-Asparagine (C)
+0.2
-1.0
+0.3
-0.5
+1.4
pH
Minimal media pH7
+0.8
-0.0
+0.4
-1.1
+0.8
pH
Minimal media pH7
+0.5
-0.3
+0.6
-0.7
+1.0
pH
Minimal media pH6
+1.2
+0.1
+1.0
-1.1
+1.3
pH
Minimal media pH6
+1.3
-0.0
+1.0
-0.9
+1.4
carbon source
D-Trehalose (C)
+0.8
-0.4
+0.6
-0.1
+2.4
carbon source
D-Trehalose (C)
+0.9
-0.5
+0.8
+0.1
+2.5
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