Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_03655 and AO356_03660 overlap by 4 nucleotidesAO356_03660 and AO356_03665 are separated by 199 nucleotidesAO356_03665 and AO356_03670 overlap by 4 nucleotidesAO356_03670 and AO356_03675 are separated by 41 nucleotides AO356_03655: AO356_03655 - heme transporter, at 815,538 to 816,206 _03655 AO356_03660: AO356_03660 - cytochrome C biogenesis protein CcmA, at 816,203 to 816,838 _03660 AO356_03665: AO356_03665 - flagellar hook-length control protein FliK, at 817,038 to 818,609 _03665 AO356_03670: AO356_03670 - flagellar biosynthesis protein FlhB, at 818,606 to 818,935 _03670 AO356_03675: AO356_03675 - hypothetical protein, at 818,977 to 819,423 _03675
Group Condition AO356_03655 AO356_03660 AO356_03665 AO356_03670 AO356_03675
anaerobic Nitrate reduction with yeast extract N.D. N.D. -1.9 +0.1 -0.4
motility outer cut, LB soft agar motility assay N.D. N.D. -1.2 +0.4 -1.3
carbon source Carbon source Sucrose 10 mM N.D. N.D. -1.3 +0.1 -0.3
stress copper (II) chloride 2.5 mM N.D. N.D. -0.1 -0.1 -1.2
carbon source L-Lysine (C) N.D. N.D. -0.2 -0.3 -0.9
carbon source Carbon source Sucrose 5 mM N.D. N.D. -0.7 -0.0 -0.6
nitrogen source D-Serine (N) N.D. N.D. -0.1 -0.7 -0.6
carbon source L-Arabinose (C) N.D. N.D. -0.6 -0.3 -0.2
carbon source Carbon source D-Mannitol 10 mM N.D. N.D. -0.2 -0.1 -0.8
carbon source acetate (C) N.D. N.D. -0.9 -0.2 +0.0
carbon source Carbon source D-Mannitol 10 mM N.D. N.D. -0.2 +0.2 -1.0
carbon source Carbon source D-Mannitol 5 mM N.D. N.D. -1.0 -0.2 +0.3
stress 1-ethyl-3-methylimidazolium acetate 5 mM N.D. N.D. -0.7 -0.4 +0.3
carbon source L-Malic (C) N.D. N.D. +0.4 -0.3 -0.6
stress KB-half, Pseudo5 supernatant N.D. N.D. -1.0 -0.0 +0.5
carbon source D-Sorbitol (C) N.D. N.D. -0.2 +0.4 -0.7
stress Doxycycline hyclate 0.0001 mg/ml N.D. N.D. -0.7 -0.1 +0.3
stress acetate 40 mM N.D. N.D. +0.6 -0.6 -0.4
survival 4C survival; 192 hrs N.D. N.D. -0.6 +0.6 -0.4
carbon source L-Alanine (C) N.D. N.D. -0.3 -0.4 +0.4
motility outer cut, LB soft agar motility assay N.D. N.D. -0.2 -0.5 +0.6
pH Minimal media pH9 N.D. N.D. -0.5 -0.1 +0.5
carbon source L-Arginine (C) N.D. N.D. +0.4 +0.2 -0.5
temperature LB 37C N.D. N.D. -0.3 -0.2 +0.7
stress nitrite 10 mM N.D. N.D. -0.4 -0.4 +1.1
motility outer cut, LB soft agar motility assay N.D. N.D. -0.6 +0.3 +0.5
carbon source Glycerol (C) N.D. N.D. +0.8 +0.0 -0.4
motility outer cut, LB soft agar motility assay N.D. N.D. -0.5 +0.2 +1.2
nitrogen source Cytosine (N) N.D. N.D. +0.6 +0.4 +0.1
stress 1-ethyl-3-methylimidazolium chloride 200 mM N.D. N.D. +0.1 +0.2 +1.0
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