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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_03345 and AO356_03350 are separated by 114 nucleotides
AO356_03350 and AO356_03355 are separated by 4 nucleotides
AO356_03355 and AO356_03360 are separated by 14 nucleotides
AO356_03360 and AO356_03365 are separated by 25 nucleotides
AO356_03345: AO356_03345 - hypothetical protein, at 743,542 to 745,536
_03345
AO356_03350: AO356_03350 - glycosyl transferase, at 745,651 to 746,667
_03350
AO356_03355: AO356_03355 - hypothetical protein, at 746,672 to 747,628
_03355
AO356_03360: AO356_03360 - hypothetical protein, at 747,643 to 748,884
_03360
AO356_03365: AO356_03365 - UDP-N-acetylglucosamine 2-epimerase, at 748,910 to 749,974
_03365
Group
Condition
AO356
_03345
AO356
_03350
AO356
_03355
AO356
_03360
AO356
_03365
nitrogen source
D-Glucosamine Hydrochloride (N)
-4.1
-5.2
-5.1
-5.4
-4.9
carbon source
NAG (C)
-3.7
-4.1
-5.2
-3.6
-3.8
carbon source
D-Trehalose (C)
-3.1
-4.3
-2.7
-3.8
-4.1
nitrogen source
Adenine (N)
-3.0
-2.9
-4.4
-2.7
-3.0
stress
Cobalt chloride 0.08 mM
-2.4
-2.3
-3.5
-3.2
-2.9
carbon source
D-Trehalose (C)
-2.7
-4.3
-1.1
-3.5
-2.4
survival
4C survival; 192 hrs
-2.6
-2.6
-1.8
-3.0
-3.9
stress
Benzethonium chloride 0.025 mM
-3.1
-3.9
-2.2
-1.7
-2.6
pH
Minimal media pH9
-2.0
-3.4
-2.7
-1.9
-3.3
nitrogen source
L-Phenylalanine (N)
-2.6
-3.0
-2.8
-2.0
-2.8
stress
Cobalt chloride 0.08 mM
-2.8
-2.2
-2.7
-2.6
-2.6
motility
outer cut, LB soft agar motility assay
-1.5
-3.6
-2.5
-3.6
-1.7
motility
outer cut, LB soft agar motility assay
-2.0
-3.2
-2.0
-3.1
-2.6
nitrogen source
Inosine (N)
-2.5
-2.9
-1.9
-3.3
-1.7
nitrogen source
L-Leucine (N)
-2.5
-2.6
-2.6
-2.2
-2.0
nitrogen source
Urea (N)
-2.1
-2.1
-3.2
-2.1
-2.0
survival
4C survival; 360 hrs
-1.7
-3.3
-1.5
-2.6
-2.1
nitrogen source
Gly-Glu (N)
-2.6
-2.4
-1.7
-2.4
-1.9
carbon source
D-Glucosamine Hydrochloride (C)
-2.0
-2.5
-2.3
-1.6
-2.5
stress
perchlorate 75 mM
-1.4
-2.9
-2.2
-2.5
-1.7
stress
nitrate 200 mM
-1.4
-3.3
-2.0
-2.1
-1.8
stress
Choline chloride 300 mM
-1.6
-2.5
-2.3
-2.0
-2.1
stress
acetate 40 mM
-0.8
-1.4
-0.9
-4.3
-2.8
survival
4C survival; 1152 hrs
-1.3
-2.4
-1.9
-1.5
-2.7
pH
Minimal media pH8
-1.4
-3.2
-1.1
-2.5
-1.4
carbon source
L-Lysine (C)
-2.2
-1.7
-2.5
-2.1
-1.2
carbon source
L-Lysine (C)
-1.8
-1.8
-1.7
-1.3
-2.6
pH
Minimal media pH6
-1.4
-1.3
-2.3
-2.8
-1.4
stress
Lomefloxacin 0.0005 mM
+1.3
+1.9
+2.4
+2.3
+2.7
phage
P5ss-5 phage 10-1 dilution SM calcl2
+6.6
+5.8
+7.7
+7.1
+7.7
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