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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_03325 and AO356_03330 are separated by 15 nucleotides
AO356_03330 and AO356_03335 are separated by 169 nucleotides
AO356_03335 and AO356_03340 are separated by 451 nucleotides
AO356_03340 and AO356_03345 are separated by 55 nucleotides
AO356_03325: AO356_03325 - hypothetical protein, at 740,107 to 740,958
_03325
AO356_03330: AO356_03330 - GntR family transcriptional regulator, at 740,974 to 741,627
_03330
AO356_03335: AO356_03335 - competence protein ComEA, at 741,797 to 742,132
_03335
AO356_03340: AO356_03340 - hypothetical protein, at 742,584 to 743,486
_03340
AO356_03345: AO356_03345 - hypothetical protein, at 743,542 to 745,536
_03345
Group
Condition
AO356
_03325
AO356
_03330
AO356
_03335
AO356
_03340
AO356
_03345
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.1
+0.0
+0.1
-4.1
carbon source
D-Trehalose (C)
-0.1
-0.0
-0.3
-0.2
-3.1
carbon source
NAG (C)
-0.1
+0.2
-0.0
+0.0
-3.7
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
+0.1
-0.1
+0.1
-3.1
stress
Cobalt chloride 0.08 mM
-0.1
-0.2
-0.1
+0.2
-2.8
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.1
-0.0
-0.3
-0.1
-2.5
stress
Benzethonium chloride 0.025 mM
+0.1
-0.0
+0.2
-0.1
-3.1
nitrogen source
Adenine (N)
+0.1
-0.2
+0.0
+0.1
-3.0
pH
Minimal media pH9
-0.2
-0.3
+0.0
-0.4
-2.0
nitrogen source
Gly-Glu (N)
-0.0
-0.1
+0.0
-0.0
-2.6
stress
Rifampicin 0.0024 mg/ml
+0.0
+0.1
-0.0
-0.0
-2.7
carbon source
Inosine (C)
-0.1
-0.1
-0.4
-0.0
-2.0
carbon source
D-Trehalose (C)
+0.1
+0.1
-0.0
+0.0
-2.7
carbon source
L-Lysine (C)
+0.0
-0.2
-0.3
-0.3
-1.8
nitrogen source
L-Leucine (N)
-0.0
+0.0
+0.0
+0.0
-2.5
nitrogen source
L-Phenylalanine (N)
+0.0
+0.1
-0.0
+0.1
-2.6
stress
nitrite 10 mM
-0.0
-0.3
-0.1
+0.1
-2.1
stress
Bacitracin 2 mg/ml
-0.1
-0.1
-0.1
-0.1
-2.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.2
+0.0
+0.1
-0.3
-2.0
survival
4C survival; 192 hrs
+0.2
+0.1
-0.0
+0.0
-2.6
survival
4C survival; 360 hrs
+0.2
-0.2
-0.3
-0.3
-1.7
nitrogen source
Urea (N)
+0.1
-0.1
-0.0
-0.1
-2.1
nitrogen source
Inosine (N)
+0.1
+0.1
+0.2
+0.1
-2.5
stress
Cobalt chloride 0.08 mM
-0.0
-0.0
+0.3
+0.3
-2.4
carbon source
L-Lysine (C)
-0.2
-0.1
+0.4
+0.2
-2.2
stress
Rifampicin 0.0016 mg/ml
+0.1
+0.1
-0.1
+0.1
-2.0
motility
outer cut, LB soft agar motility assay
-0.2
+0.2
+0.5
+0.1
-2.0
stress
Paraquat dichloride 0.0625 mg/ml
-0.0
-0.1
+0.3
+0.2
-1.7
anaerobic
Nitrate reduction with yeast extract
+0.3
-0.1
+0.9
-0.4
-1.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+0.1
-0.6
-0.4
+6.6
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