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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_03290 and AO356_03295 are separated by 117 nucleotides
AO356_03295 and AO356_03300 are separated by 64 nucleotides
AO356_03300 and AO356_03305 are separated by 191 nucleotides
AO356_03305 and AO356_03310 are separated by 204 nucleotides
AO356_03290: AO356_03290 - alpha/beta hydrolase, at 728,506 to 729,543
_03290
AO356_03295: AO356_03295 - transcriptional regulator, at 729,661 to 730,359
_03295
AO356_03300: AO356_03300 - histidine kinase, at 730,424 to 733,075
_03300
AO356_03305: AO356_03305 - ATPase, at 733,267 to 733,812
_03305
AO356_03310: AO356_03310 - potassium-transporting ATPase subunit B, at 734,017 to 736,071
_03310
Group
Condition
AO356
_03290
AO356
_03295
AO356
_03300
AO356
_03305
AO356
_03310
anaerobic
Nitrate reduction with yeast extract
-0.5
+0.5
+0.2
-3.7
-0.7
stress
nitrite 10 mM
+0.3
-0.2
-0.1
-3.6
+0.6
motility
outer cut, LB soft agar motility assay
-0.5
+0.1
+0.2
-2.4
+0.3
stress
Lomefloxacin 0.0005 mM
-0.4
-0.3
+0.1
-1.0
+0.3
stress
Tetracycline 0.0001 mg/ml
-0.3
-0.1
+0.1
-1.1
+0.1
carbon source
D-Xylose (C)
-0.1
-0.0
-0.4
-0.9
+0.1
carbon source
D-Galactose (C)
+0.0
+0.1
+0.1
-1.5
+0.1
stress
Cobalt chloride 0.08 mM
+0.1
-0.1
+0.1
-1.3
+0.1
stress
Cholin acetate 40 mM
+0.4
+0.0
-0.3
-1.3
+0.0
carbon source
D-Ribose (C)
-0.1
+0.2
-0.4
-0.7
-0.1
carbon source
D-Ribose (C)
+0.2
-0.1
-0.4
-0.8
+0.0
carbon source
L-Lysine (C)
+0.2
+0.1
-0.7
-0.2
-0.4
stress
Vanillin 1.25 mM
+0.0
+0.3
-0.0
-1.0
+0.0
carbon source
D,L-Lactate (C)
+0.1
+0.3
-0.2
-0.9
-0.0
stress
Cobalt chloride 0.08 mM
+0.2
-0.4
+0.1
-0.4
+0.2
stress
Rifampicin 0.0016 mg/ml
+0.4
+0.2
-0.1
-0.9
-0.0
stress
Sisomicin 0.001 mg/ml
-0.3
-0.6
-0.1
+0.3
+0.4
carbon source
L-Lysine (C)
+0.4
-0.1
-0.6
+0.2
-0.0
stress
D-Cycloserine 0.1 mg/ml
+0.4
+0.1
+0.1
-0.7
+0.1
carbon source
D-Trehalose (C)
+0.2
+0.7
-0.5
-0.4
+0.1
carbon source
acetate (C)
+0.2
+0.2
-0.3
-0.3
+0.4
pH
Minimal media pH8
-0.1
-0.3
-0.3
+0.9
+0.1
stress
Aluminum chloride 5 mM
-0.4
+0.2
-0.1
+0.6
-0.0
carbon source
Carbon source D-Mannitol 5 mM
-0.3
-0.1
+0.0
+0.8
-0.2
carbon source
Carbon source D-Glucose 10 mM
+0.1
-0.4
+0.1
+0.7
-0.2
stress
copper (II) chloride 2.5 mM
+1.1
-0.2
-0.2
-0.5
+0.2
carbon source
L-Histidine (C)
+0.2
+0.2
-0.4
+0.4
+0.3
motility
outer cut, LB soft agar motility assay
+0.4
+0.3
+0.1
+0.3
+0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
+0.3
+0.8
+0.0
+0.7
stress
KB-half, Pseudo5 supernatant
+1.0
+0.3
+1.0
+0.7
+1.0
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