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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_03210 and AO356_03215 are separated by 123 nucleotides
AO356_03215 and AO356_03220 are separated by 252 nucleotides
AO356_03220 and AO356_03225 are separated by 56 nucleotides
AO356_03225 and AO356_03230 are separated by 10 nucleotides
AO356_03210: AO356_03210 - hypothetical protein, at 713,917 to 714,168
_03210
AO356_03215: AO356_03215 - hypothetical protein, at 714,292 to 715,263
_03215
AO356_03220: AO356_03220 - hypothetical protein, at 715,516 to 715,809
_03220
AO356_03225: AO356_03225 - esterase, at 715,866 to 716,471
_03225
AO356_03230: AO356_03230 - ABC transporter, at 716,482 to 717,165
_03230
Group
Condition
AO356
_03210
AO356
_03215
AO356
_03220
AO356
_03225
AO356
_03230
stress
Aluminum chloride 5 mM
-3.8
-2.0
N.D.
-0.2
N.D.
stress
Doxycycline hyclate 0.0001 mg/ml
-2.2
-1.1
N.D.
-0.4
N.D.
pH
Minimal media pH9
-2.0
-1.0
N.D.
-0.0
N.D.
carbon source
acetate (C)
-0.9
-1.4
N.D.
-0.3
N.D.
stress
Lomefloxacin 0.0005 mM
-0.5
-1.6
N.D.
-0.4
N.D.
stress
Nalidixic 0.004 mg/ml
-1.2
-0.5
N.D.
-0.2
N.D.
carbon source
acetate (C)
-0.6
-1.3
N.D.
-0.1
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.1
-1.0
N.D.
-0.8
N.D.
carbon source
D-Alanine (C)
-1.0
-0.4
N.D.
-0.2
N.D.
stress
methylglyoxal 0.016 vol%
-0.8
-0.8
N.D.
+0.2
N.D.
stress
KB-half, Pseudo5 supernatant
+1.2
-0.2
N.D.
-0.4
N.D.
motility
outer cut, LB soft agar motility assay
-0.3
+1.2
N.D.
+0.4
N.D.
carbon source
D-Ribose (C)
+0.8
+0.8
N.D.
-0.2
N.D.
stress
Cholin acetate 40 mM
+1.0
+0.7
N.D.
+0.0
N.D.
carbon source
D-Xylose (C)
+1.1
+0.7
N.D.
+0.0
N.D.
stress
Bacitracin 2 mg/ml
+0.8
+0.6
N.D.
+0.5
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.8
+0.9
N.D.
+0.2
N.D.
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.6
+1.0
N.D.
+0.5
N.D.
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.7
+1.0
N.D.
+0.4
N.D.
stress
Cobalt chloride 0.08 mM
+1.0
+1.0
N.D.
+0.2
N.D.
motility
outer cut, LB soft agar motility assay
+0.3
+1.4
N.D.
+0.5
N.D.
stress
acetate 40 mM
+1.0
+1.0
N.D.
+0.3
N.D.
stress
Nickel (II) chloride 0.625 mM
+0.9
+1.2
N.D.
+0.2
N.D.
anaerobic
Nitrate reduction with yeast extract
+0.7
+0.6
N.D.
+1.1
N.D.
stress
Cobalt chloride 0.08 mM
+1.4
+0.8
N.D.
+0.1
N.D.
motility
outer cut, LB soft agar motility assay
+1.4
+1.2
N.D.
+0.6
N.D.
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+1.6
+1.6
N.D.
+0.1
N.D.
stress
copper (II) chloride 2.5 mM
+1.9
+1.4
N.D.
+1.0
N.D.
motility
outer cut, LB soft agar motility assay
+2.6
+1.7
N.D.
+0.4
N.D.
stress
Choline chloride 500 mM
+2.3
+2.5
N.D.
+0.9
N.D.
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