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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_02910 and AO356_02915 are separated by 180 nucleotides
AO356_02915 and AO356_02920 are separated by 166 nucleotides
AO356_02920 and AO356_02925 are separated by 26 nucleotides
AO356_02925 and AO356_02930 are separated by 121 nucleotides
AO356_02910: AO356_02910 - TetR family transcriptional regulator, at 651,845 to 652,471
_02910
AO356_02915: AO356_02915 - terpene utilization protein AtuA, at 652,652 to 654,442
_02915
AO356_02920: AO356_02920 - acetyl-CoA carboxylase carboxyltransferase subunit, at 654,609 to 656,225
_02920
AO356_02925: AO356_02925 - acyl-CoA dehydrogenase, at 656,252 to 657,409
_02925
AO356_02930: AO356_02930 - 3-methylcrotonyl-CoA carboxylase, at 657,531 to 659,501
_02930
Group
Condition
AO356
_02910
AO356
_02915
AO356
_02920
AO356
_02925
AO356
_02930
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.5
-0.3
-0.0
-0.2
-0.2
resistance
20 mM putrescine
-0.4
-0.2
-0.1
-0.1
-0.3
carbon source
L-Lysine (C)
-0.6
-0.1
-0.1
+0.1
-0.4
carbon source
D-Fructose (C)
-0.5
-0.3
-0.0
-0.1
-0.1
carbon source
L-Histidine (C)
-0.4
-0.3
-0.0
-0.1
-0.2
stress
nitrite 10 mM
-0.3
-0.4
+0.0
-0.1
-0.2
nitrogen source
Urea (N)
-0.2
-0.5
+0.0
-0.1
-0.2
motility
outer cut, LB soft agar motility assay
+0.7
-0.5
-0.3
+0.1
-0.9
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.8
-0.2
+0.1
-0.0
+0.1
carbon source
D-Lactate (C)
-0.3
+0.2
-0.0
-0.1
-0.5
stress
Cisplatin 0.0032 mg/ml
-0.2
+0.2
+0.1
-0.1
-0.6
pH
Minimal media pH7
-0.2
-0.1
+0.2
+0.1
-0.5
carbon source
acetate (C)
-0.6
+0.1
+0.2
-0.1
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.4
-0.5
+0.0
+0.2
+0.3
carbon source
D-Gluconic Acid (C)
-0.0
-0.2
+0.1
-0.3
+0.3
carbon source
acetate (C)
-0.5
+0.3
+0.1
+0.2
-0.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.1
+0.4
+0.1
+0.1
-0.7
carbon source
D-Fructose (C)
-0.4
-0.0
+0.2
+0.0
+0.3
motility
outer cut, LB soft agar motility assay
+0.8
-0.5
-0.0
+0.1
-0.0
carbon source
Carbon source Sucrose 10 mM
+0.2
-0.3
+0.0
-0.0
+0.4
carbon source
D-Trehalose (C)
+0.7
-0.1
+0.1
-0.0
-0.3
stress
Lomefloxacin 0.0005 mM
+0.2
+0.5
-0.0
+0.0
-0.3
stress
nitrate 200 mM
-0.2
+0.3
+0.0
+0.5
-0.2
motility
outer cut, LB soft agar motility assay
+0.6
-0.1
+0.1
-0.2
+0.0
stress
Sisomicin 0.001 mg/ml
+0.4
-0.2
-0.1
+0.2
+0.3
stress
Benzalkonium Chloride 0.008 mg/ml
+0.2
-0.4
+0.2
+0.1
+0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.2
+0.2
+0.8
+0.2
-0.2
anaerobic
Nitrate reduction with yeast extract
+0.5
+0.5
-0.2
+0.1
+0.0
stress
KB-half, Pseudo5 supernatant
-0.3
+0.5
+0.7
-0.1
+0.2
carbon source
D-Trehalose (C)
+0.8
+0.6
+0.0
+0.2
+0.2
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