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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_02820 and AO356_02825 are separated by 157 nucleotides
AO356_02825 and AO356_02830 are separated by 184 nucleotides
AO356_02830 and AO356_02835 are separated by 132 nucleotides
AO356_02835 and AO356_02840 are separated by 103 nucleotides
AO356_02820: AO356_02820 - EstX protein, at 619,947 to 620,936
_02820
AO356_02825: AO356_02825 - phosphoenolpyruvate synthase, at 621,094 to 623,469
_02825
AO356_02830: AO356_02830 - transcriptional regulator, at 623,654 to 624,472
_02830
AO356_02835: AO356_02835 - thiamine biosynthesis protein ThiJ, at 624,605 to 625,450
_02835
AO356_02840: AO356_02840 - LuxR family transcriptional regulator, at 625,554 to 626,450
_02840
Group
Condition
AO356
_02820
AO356
_02825
AO356
_02830
AO356
_02835
AO356
_02840
carbon source
L-Glutamine (C)
-0.1
-2.1
-0.6
-0.0
-0.1
carbon source
L-Glutamine (C)
-0.2
-2.1
-0.6
+0.1
+0.0
carbon source
acetate (C)
-0.3
-0.9
-0.9
-0.3
-0.1
carbon source
L-Proline (C)
-0.3
-1.9
-0.3
+0.0
-0.0
carbon source
NAG (C)
-0.2
-3.5
+0.8
+0.3
+0.1
carbon source
L-Proline (C)
-0.0
-1.9
-0.4
-0.0
+0.1
carbon source
D-Lactate (C)
-0.0
-0.7
-1.4
+0.0
-0.0
carbon source
acetate (C)
-0.3
-1.0
-0.7
-0.2
-0.0
carbon source
D-Lactate (C)
+0.1
-0.8
-1.4
-0.1
+0.0
stress
Lomefloxacin 0.0005 mM
-1.5
-0.7
+0.1
+0.0
+0.1
stress
Sisomicin 0.001 mg/ml
-0.2
-0.4
-1.1
-0.1
-0.2
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-1.0
-0.2
-0.3
-0.2
-0.3
carbon source
L-Glutamic (C)
-0.0
-1.5
-0.2
+0.0
-0.1
carbon source
L-Leucine (C)
-0.2
+0.2
-1.7
+0.1
+0.1
carbon source
L-Glutamic (C)
+0.1
-1.7
-0.1
+0.2
-0.1
carbon source
Carbon source Sucrose 10 mM
-0.2
-0.2
-0.8
-0.3
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
-0.9
-0.1
-0.3
+0.1
carbon source
D-Sorbitol (C)
+0.1
-0.3
-0.9
+0.1
-0.1
carbon source
Tween 20 (C)
-0.1
-0.7
-0.5
+0.2
+0.1
carbon source
L-Lysine (C)
+0.2
+0.2
-1.0
+0.2
-0.0
stress
Chlorite 0.08 mM
+0.0
+0.2
-0.7
+0.2
-0.3
pH
Minimal media pH9
+0.3
-0.3
-0.7
-0.1
+0.3
carbon source
a-Ketoglutaric (C)
-0.3
-0.6
+0.1
+0.2
+0.2
carbon source
L-Lysine (C)
+0.2
+0.4
-0.7
+0.3
-0.1
nitrogen source
L-Leucine (N)
-0.1
+1.0
-0.3
+0.0
+0.2
carbon source
D-Xylose (C)
-0.2
-0.1
+1.0
+0.1
+0.1
carbon source
D-Xylose (C)
-0.2
-0.2
+1.1
+0.1
+0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.5
+0.6
+0.1
+0.2
-0.1
stress
copper (II) chloride 2.5 mM
+0.5
+0.5
+0.1
+0.6
+0.2
stress
Choline chloride 500 mM
+1.1
+0.9
+0.4
+0.2
+0.2
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